An overview of recent developments in the interpretation and prediction of fast internal protein dynamics (Q36846761)

16 August 2017

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title

An overview of recent developments in the interpretation and prediction of fast internal protein dynamics (English)

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16 August 2017

Gabrielle Nodet

1

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16 August 2017

Daniel Abergel

series ordinal

2

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16 August 2017

publication date

12 June 2007

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16 August 2017

number of pages

9

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European Biophysics Journal

inferred from page(s)

published in

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16 August 2017

volume

36

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16 August 2017

issue

8

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16 August 2017

page(s)

985-993

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A test of the model-free formulas. Effects of anisotropic rotational diffusion and dimerization.

16 August 2017

cites work

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Crossref

https://api.crossref.org/works/10.1007%2FS00249-007-0167-X

21 January 2018

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Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions

21 January 2018

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Direct measurement of angles between bond vectors in high-resolution NMR.

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12 December 2020

Reorientational contact-weighted elastic network model for the prediction of protein dynamics: comparison with NMR relaxation

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A structural mode-coupling approach to 15N NMR relaxation in proteins

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12 December 2020

Structural Determinants of Protein Dynamics: Analysis of 15N NMR Relaxation Measurements for Main-Chain and Side-Chain Nuclei of Hen Egg White Lysozyme

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12 December 2020

Contact model for the prediction of NMR N-H order parameters in globular proteins

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12 December 2020

Collective NMR relaxation model applied to protein dynamics

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12 December 2020

Interpretation of 15N NMR relaxation data of globular proteins using hydrodynamic calculations with HYDRONMR.

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12 December 2020

Determination of the backbone mobility of ribonuclease T1 and its 2'GMP complex using molecular dynamics simulations and NMR relaxation data.

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12 December 2020

Networks of coupled rotators: relationship between structures and internal dynamics in metal-binding proteins. Applications to apo- and holo-calbindin.

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12 December 2020

Three dimensional structure and implications for the catalytic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei

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12 December 2020

Prediction of methyl-side chain dynamics in proteins.

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12 December 2020

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12 December 2020

Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications

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12 December 2020

A study of protein side-chain dynamics from new 2H auto-correlation and 13C cross-correlation NMR experiments: application to the N-terminal SH3 domain from drk.

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12 December 2020

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

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12 December 2020

Dynamic activation of protein function: a view emerging from NMR spectroscopy.

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12 December 2020

Rotational diffusion anisotropy of proteins from simultaneous analysis of 15N and 13C alpha nuclear spin relaxation

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12 December 2020

Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding

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12 December 2020

Effects of protein-pheromone complexation on correlated chemical shift modulations

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12 December 2020

Accuracy and precision of NMR relaxation experiments and MD simulations for characterizing protein dynamics

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12 December 2020

Direct Determination of Changes of Interdomain Orientation on Ligation: Use of the Orientational Dependence of15N NMR Relaxation in Abl SH(32)†

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12 December 2020

An efficient computational method for predicting rotational diffusion tensors of globular proteins using an ellipsoid representation

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12 December 2020

A simple model for NMR relaxation in the presence of internal motions with dynamical coupling

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12 December 2020

Deuterium spin probes of side-chain dynamics in proteins. 1. Measurement of five relaxation rates per deuteron in (13)C-labeled and fractionally (2)H-enriched proteins in solution

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12 December 2020

Predicting internal protein dynamics from structures using coupled networks of hindered rotators.

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12 December 2020

Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules

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12 December 2020

General Framework for Studying the Dynamics of Folded and Nonfolded Proteins by NMR Relaxation Spectroscopy and MD Simulation

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A 500 ps molecular dynamics simulation study of interleukin-1 beta in water. Correlation with nuclear magnetic resonance spectroscopy and crystallography.

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12 December 2020

Calculation of hydrodynamic properties of globular proteins from their atomic-level structure

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12 December 2020

Slow backbone dynamics of the C-terminal fragment of human centrin 2 in complex with a target peptide probed by cross-correlated relaxation in multiple-quantum NMR spectroscopy.

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12 December 2020

Efficient determination of angles subtended by C(alpha)-H(alpha) and N-H(N) vectors in proteins via dipole-dipole cross-correlation

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Differential multiple-quantum relaxation arising from cross-correlated time-modulation of isotropic chemical shifts

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Nmr probes of molecular dynamics: overview and comparison with other techniques

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A simple method to measure 13CH2 heteronuclear dipolar cross-correlation spectral densities

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Long-range motional restrictions in a multidomain zinc-finger protein from anisotropic tumbling.

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Methyl dynamics in proteins from NMR slowly relaxing local structure spin relaxation analysis: A new perspective

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Molecular dynamics and NMR spin relaxation in proteins

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Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme

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12 December 2020

HYDRONMR: prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations

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12 December 2020

Increased protein backbone conformational entropy upon hydrophobic ligand binding

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12 December 2020

Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

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12 December 2020

Analysis of the backbone dynamics of interleukin-1 beta using two-dimensional inverse detected heteronuclear 15N-1H NMR spectroscopy

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12 December 2020

A novel view of domain flexibility in E. coli adenylate kinase based on structural mode-coupling (15)N NMR relaxation.

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12 December 2020

Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution

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12 December 2020

Flexibility and packing in proteins

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12 December 2020

Relationships between protein structure and dynamics from a database of NMR-derived backbone order parameters.

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12 December 2020

10.1007/S00249-007-0167-X

Identifiers

DOI

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16 August 2017

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