Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna (Q36990893)

17 August 2017

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna (English)

1 reference

17 August 2017

0 references

1 reference

whole genome sequencing

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14

Vishwajit Sur Chowdhury

1 reference

17 August 2017

23

Takashi Gojobori

1 reference

17 August 2017

Kazuki Mori

2

0 references

Kazuho Ikeo

20

object named as

Kazuho Ikeo

1 reference

17 August 2017

1

Yoji Nakamura

1 reference

17 August 2017

8

Nobuhiko Ojima

1 reference

17 August 2017

11

Motoshige Yasuike

1 reference

17 August 2017

7

Yuya Shigenobu

1 reference

17 August 2017

15

Takanori Kobayashi

1 reference

17 August 2017

16

Kazuhiro Nakajima

1 reference

17 August 2017

17

Motohiko Sano

1 reference

17 August 2017

18

Tokio Wada

1 reference

17 August 2017

22

Satoru Kuhara

1 reference

17 August 2017

24

Kiyoshi Inouye

1 reference

17 August 2017

Kenji Saitoh

3

1 reference

17 August 2017

Kenshiro Oshima

4

1 reference

17 August 2017

Miyuki Mekuchi

5

1 reference

17 August 2017

Takuma Sugaya

6

1 reference

17 August 2017

Shigeru Muta

9

1 reference

17 August 2017

Atushi Fujiwara

10

1 reference

17 August 2017

Ichiro Oohara

12

1 reference

17 August 2017

Hideki Hirakawa

13

1 reference

17 August 2017

Kosuke Tashiro

19

1 reference

17 August 2017

Masahira Hattori

21

1 reference

17 August 2017

language of work or name

English

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publication date

18 June 2013

1 reference

Proceedings of the National Academy of Sciences of the United States of America

17 August 2017

1 reference

17 August 2017

110

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17 August 2017

27

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17 August 2017

11061-11066

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Opsin gene duplication and divergence in ray-finned fish

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Visual spectral sensitivity of photopic juvenile Pacific bluefin tuna (Thunnus orientalis).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

The genome sequence of Atlantic cod reveals a unique immune system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Conservation. High value and long life--double jeopardy for tunas and billfishes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

On the origin and trigger of the notothenioid adaptive radiation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Molecular basis of spectral tuning in the red- and green-sensitive (M/LWS) pigments in vertebrates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

The molecular basis of color vision in colorful fish: four long wave-sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Evolution of vertebrate visual pigments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

The new paradigm of flow cell sequencing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Visual sensitivities tuned by heterochronic shifts in opsin gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Recent developments in the MAFFT multiple sequence alignment program

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Evolution of the cichlid visual palette through ontogenetic subfunctionalization of the opsin gene arrays.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Opsins: evolution in waiting

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Molecular evolution of color vision in vertebrates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Molecular genetics and the evolution of ultraviolet vision in vertebrates.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Migratory movements, depth preferences, and thermal biology of Atlantic bluefin tuna

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Crystal structure of rhodopsin: A G protein-coupled receptor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Molecular evolution of vertebrate visual pigments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

The neighbor-joining method: a new method for reconstructing phylogenetic trees

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Glutamic acid-113 serves as the retinylidene Schiff base counterion in bovine rhodopsin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Genes expressed in Blue Fin Tuna (Thunnus thynnus) liver and gonads

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Lifting the cloak of invisibility: the effects of changing optical conditions on pelagic crypsis.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

The influence of ontogeny and light environment on the expression of visual pigment opsins in the retina of the black bream, Acanthopagrus butcheri.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Convergent loss of an anciently duplicated, functionally divergent RH2 opsin gene in the fugu and Tetraodon pufferfish lineages.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Temporal and spatial changes in the expression pattern of multiple red and green subtype opsin genes during zebrafish development.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Reconstitution of ancestral green visual pigments of zebrafish and molecular mechanism of their spectral differentiation

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Spectral differentiation of blue opsins between phylogenetically close but ecologically distant goldfish and zebrafish

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

The molecular basis for spectral tuning of rod visual pigments in deep-sea fish.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Evolutionary analysis of cytochrome b sequences in some Perciformes: evidence for a slower rate of evolution than in mammals.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703999

Visual pigments and visual range underwater

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23781100

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Changes in the scotopic vision of juvenile Pacific bluefin tuna (Thunnus orientalis) with growth

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23781100

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1302051110

1 reference

17 August 2017

0 references

1 reference

17 August 2017

1 reference