Quantitative studies of ribosome conformational dynamics (Q37029425)

17 August 2017

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title

Quantitative studies of ribosome conformational dynamics (English)

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17 August 2017

2

Jennifer A Doudna

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17 August 2017

Christopher S Fraser

1

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17 August 2017

publication date

1 May 2007

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Quarterly Reviews of Biophysics

17 August 2017

published in

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17 August 2017

volume

40

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17 August 2017

issue

2

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17 August 2017

page(s)

163-189

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The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome

17 August 2017

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The structural basis of ribosome activity in peptide bond synthesis

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Interaction of the RNP1 motif in PRT1 with HCR1 promotes 40S binding of eukaryotic initiation factor 3 in yeast

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Following the dynamics of changes in solvent accessibility of 16 S and 23 S rRNA during ribosomal subunit association using synchrotron-generated hydroxyl radicals

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Bridging conformational dynamics and function using single-molecule spectroscopy.

21 January 2018

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Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes

21 January 2018

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Identification of two distinct hybrid state intermediates on the ribosome

21 January 2018

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Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

21 January 2018

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Binding of eukaryotic initiation factor 3 to ribosomal 40S subunits and its role in ribosomal dissociation and anti-association

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Structure of the Escherichia coli ribosomal termination complex with release factor 2

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Mapping the inside of the ribosome with an RNA helical ruler

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21 January 2018

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Centaurin beta4 in cancer

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Mouse p56 blocks a distinct function of eukaryotic initiation factor 3 in translation initiation

21 January 2018

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Intersubunit movement is required for ribosomal translocation.

21 January 2018

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Probing the conformational changes in 5.8S, 18S and 28S rRNA upon association of derived subunits into complete 80S ribosomes

21 January 2018

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eIF3: a versatile scaffold for translation initiation complexes

21 January 2018

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Mechanism of ribosomal subunit association: discrimination of specific sites in 16 S RNA essential for association activity

21 January 2018

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A time-resolved investigation of ribosomal subunit association.

21 January 2018

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Visualization of RNA tertiary structure by RNA-EDTA.Fe(II) autocleavage: analysis of tRNA(Phe) with uridine-EDTA.Fe(II) at position 47

21 January 2018

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Conservation of the primary structure at the 3' end of 18S rRNA from eucaryotic cells

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Ligand-induced conformational changes observed in single RNA molecules

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

High-resolution, single-molecule measurements of biomolecular motion

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Ribosomes and translation

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

The role of eIF-4C in protein synthesis initiation complex formation

21 January 2018

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A kinetic light-scattering study of the binding of wheat germ protein synthesis initiation factor 3 to 40S ribosomal subunits and 80S ribosomes

21 January 2018

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Effects of eucaryotic initiation factor 3 on eucaryotic ribosomal subunit equilibrium and kinetics

21 January 2018

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Fluorescence study of the binding of m7GpppG and rabbit globin mRNA to protein synthesis initiation factors 4A, 4E, and 4F.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

A fluorescence study of the interaction of protein synthesis initiation factors 4A, 4E, and 4F with mRNA and oligonucleotide analogs

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Kinetics of ribosome dissociation and subunit association studied in a light-scattering stopped-flow apparatus

21 January 2018

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Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies

21 January 2018

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The j-subunit of human translation initiation factor eIF3 is required for the stable binding of eIF3 and its subcomplexes to 40 S ribosomal subunits in vitro

21 January 2018

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Structural and mechanistic insights into hepatitis C viral translation initiation

21 January 2018

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eIF3j is located in the decoding center of the human 40S ribosomal subunit

21 January 2018

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A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome

21 January 2018

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A ratchet-like inter-subunit reorganization of the ribosome during translocation

21 January 2018

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N- and C-terminal residues of eIF1A have opposing effects on the fidelity of start codon selection

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

The real-time path of translation factor IF3 onto and off the ribosome.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Observation of intersubunit movement of the ribosome in solution using FRET.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Distinct functions of eukaryotic translation initiation factors eIF1A and eIF3 in the formation of the 40 S ribosomal preinitiation complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Protection of specific sites in 16 S RNA from chemical modification by association of 30 S and 50 S ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

X-ray crystal structures of 70S ribosome functional complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Crystal structure of an initiation factor bound to the 30S ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Structure and function of bacterial initiation factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

tRNA dynamics on the ribosome during translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

tRNA selection and kinetic proofreading in translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Structural basis for mRNA and tRNA positioning on the ribosome

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Ribosome formation from subunits studied by stopped-flow and rayleigh light scattering

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Binding of Escherichia coli protein synthesis initiation factor IF1 to 30S ribosomal subunits measured by fluorescence polarization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Single-molecule RNA science

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

The cryo-EM structure of a translation initiation complex from Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Structural basis for messenger RNA movement on the ribosome

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Structural insights on the translation initiation complex: ghosts of a universal initiation complex

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Crystal structure of the ribosome at 5.5 A resolution

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Development and characterization of a reconstituted yeast translation initiation system.

21 January 2018

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Cross-linking of Met-tRNAf to eIF-2 beta and to the ribosomal proteins S3a and S6 within the eukaryotic inhibition complex, eIF-2 .GMPPCP.Met-tRNAf.small ribosomal subunit

21 January 2018

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Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications

21 January 2018

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The alpha and gamma subunits of initiation factor eIF-2 can be cross-linked to 18S ribosomal RNA within the quaternary initiation complex, eIF-2.Met-tRNAf.GDPCP.small ribosomal subunit.

21 January 2018

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Cross-linking of mRNA to initiation factor eIF-3, 24 kDa cap binding protein and ribosomal proteins S1, S3/3a, S6 and S11 within the 48S pre-initiation complex.

21 January 2018

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Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation

21 January 2018

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Crosslinking of initiation factor eIF-2 to proteins of the small subunit of rat liver ribosomes

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Crystal structure of the ribosome recycling factor bound to the ribosome

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Tertiary Structure Around the Guanosine-Binding Site of the Tetrahymena Ribozyme

21 January 2018

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Three-dimensional reconstruction of mammalian 40 S ribosomal subunit

21 January 2018

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Locking and unlocking of ribosomal motions

21 January 2018

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Position of eukaryotic initiation factor eIF5B on the 80S ribosome mapped by directed hydroxyl radical probing

21 January 2018

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Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP.

21 January 2018

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Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome

21 January 2018

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Architecture of the Escherichia coli ribosome as determined by immune electron microscopy

21 January 2018

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Determination of thermodynamics and kinetics of RNA reactions by force

21 January 2018

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Antibiotics and the ribosome.

21 January 2018

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Activity of Initiation Factor F3 in Dissociating Escherichia coli Ribosomes

21 January 2018

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Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome

21 January 2018

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How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli

21 January 2018

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Visualization of elongation factor Tu on the Escherichia coli ribosome.

21 January 2018

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Photoaffinity labeling of rat liver ribosomes by phenylalanine-tRNA N-Acylated by 2-nitro-4-azidobenzoic acid

21 January 2018

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Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit

21 January 2018

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Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

21 January 2018

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A polypeptide in eukaryotic initiation factors that crosslinks specifically to the 5'-terminal cap in mRNA

21 January 2018

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The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites

21 January 2018

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Accessibility of 18S rRNA in human 40S subunits and 80S ribosomes at physiological magnesium ion concentrations--implications for the study of ribosome dynamics

21 January 2018

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Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry

21 January 2018

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Structure of the 70S ribosome complexed with mRNA and tRNA

21 January 2018

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Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA.

21 January 2018

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Intermediate states in the movement of transfer RNA in the ribosome

21 January 2018

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Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites

21 January 2018

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Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes.

21 January 2018

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Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits

21 January 2018

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Cap-dependent and cap-independent translation in eukaryotic systems

21 January 2018

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Assays for eukaryotic protein synthesis

21 January 2018

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Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

21 January 2018

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Structural analysis of kasugamycin inhibition of translation.

21 January 2018

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Translation of Rabbit Hemoglobin Messenger RNA In Vitro with Purified and Partially Purified Components from Brain or Liver of Different Species

21 January 2018

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Initiation of mammalian protein synthesis. I. Purification and characterization of seven initiation factors

21 January 2018

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The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.

21 January 2018

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Fidelity of aminoacyl-tRNA selection on the ribosome: kinetic and structural mechanisms

21 January 2018

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A cryo-electron microscopic study of ribosome-bound termination factor RF2

21 January 2018

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Transfer of oxygen from an artificial protease to peptide carbon during proteolysis

21 January 2018

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Regulation of protein synthesis by insulin

21 January 2018

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Location of translational initiation factor IF3 on the small ribosomal subunit

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Reconstitution reveals the functional core of mammalian eIF3

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Unwinding single RNA molecules using helicases involved in eukaryotic translation initiation.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Translation initiation: structures, mechanisms and evolution

21 January 2018

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Cocrystal structure of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP

21 January 2018

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Mammalian translation initiation factor eIF1 functions with eIF1A and eIF3 in the formation of a stable 40 S preinitiation complex

21 January 2018

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Communication between eukaryotic translation initiation factors 1 and 1A on the yeast small ribosomal subunit

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

A conformational change in the eukaryotic translation preinitiation complex and release of eIF1 signal recognition of the start codon

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Translation initiation by factor-independent binding of eukaryotic ribosomes to internal ribosomal entry sites

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

The joining of ribosomal subunits in eukaryotes requires eIF5B.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

Sequence of steps in ribosome recycling as defined by kinetic analysis.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

An efficient mRNA-dependent translation system from reticulocyte lysates

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Direct Visualization of A-, P-, and E-Site Transfer RNAs in the Escherichia coli Ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

Fluorescence polarization studies of the interaction of Escherichia coli protein synthesis initiation factor 3 with 30S ribosomal subunits

21 January 2018

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Iron(II) EDTA used to measure the helical twist along any DNA molecule

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7 January 2021

Peptidyl transferase center activity observed in single ribosomes

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7 January 2021

Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Purification and characterization of seven initiation factors for mammalian protein synthesis

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Eukaryotic initiation factor 3 does not prevent association through physical blockage of the ribosomal subunit-subunit interface

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs

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7 January 2021

A small particulate component of the cytoplasm

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Mapping of Nuclease‐Sensitive Sites in Native Reticulocyte Ribosomes — An Analysis of the Accessibility of Ribosomal RNA to Enzymatic Cleavage

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https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

[4] Preparation and use of nuclease-treated rabbit reticulocyte lysates for the translation of eukaryotic messenger RNA

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Enzymatic approaches to probing of RNA secondary and tertiary structure

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Specific protection of 16 S rRNA by translational initiation factors

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Structure of 18 S ribosomal RNA in native 40 S ribosomal subunits

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Protein synthesis initiation factors from rabbit reticulocytes: purification, characterization, and radiochemical labeling

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Immunochemical detection of proteins in the small subunit of rat liver ribosomes involved in binding of the ternary initiation complex

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

tRNAi(met) functions in directing the scanning ribosome to the start site of translation

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Kinetic studies of the rates and mechanism of assembly of the protein synthesis initiation complex

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

A fluorescence study of the binding of eucaryotic initiation factors to messenger RNA and messenger RNA analogues

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Footprinting protein-DNA complexes with gamma-rays

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Directed hydroxyl radical probing using iron(II) tethered to RNA.

1 reference

https://api.crossref.org/works/10.1017%2FS0033583507004647

7 January 2021

Initiation of mammalian protein synthesis. II. The assembly of the initiation complex with purified initiation factors

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1017/S0033583507004647

Identifiers

DOI

10.1017/S0033583507004647

1 reference

17 August 2017

1 reference