Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. (Q37033503)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18820024%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

title

Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria (English)

1 reference

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14 January 2020

0 references

1 reference

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2

1 reference

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14 January 2020

Mikhail Gelfand

series ordinal

6

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14 January 2020

3

Eric Alm

1 reference

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14 January 2020

5

Inna Dubchak

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14 January 2020

author name string

Alexey E Kazakov

series ordinal

1

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14 January 2020

Adam Paul Arkin

series ordinal

4

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14 January 2020

language of work or name

English

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publication date

26 September 2008

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14 January 2020

published in

Journal of Bacteriology

1 reference

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14 January 2020

volume

191

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14 January 2020

page(s)

52-64

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14 January 2020

issue

1

1 reference

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The Pseudomonas aeruginosa PsrA responds to long-chain fatty acid signals to regulate the fadBA5 beta-oxidation operon

14 January 2020

cites work

1 reference

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29 September 2017

1 reference

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Regulation of fatty acid metabolism in bacteria.

29 September 2017

1 reference

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Orthologous transcription factors in bacteria have different functions and regulate different genes

29 September 2017

1 reference

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Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

29 September 2017

1 reference

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Bacterial regulatory networks are extremely flexible in evolution

29 September 2017

1 reference

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Identification of genes and proteins necessary for catabolism of acyclic terpenes and leucine/isovalerate in Pseudomonas aeruginosa

29 September 2017

1 reference

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The atu and liu clusters are involved in the catabolic pathways for acyclic monoterpenes and leucine in Pseudomonas aeruginosa

29 September 2017

1 reference

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Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH.

29 September 2017

1 reference

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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

29 September 2017

1 reference

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Unexpected functional diversity among FadR fatty acid transcriptional regulatory proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Novel target genes of PsrA transcriptional regulator of Pseudomonas aeruginosa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions

29 September 2017

1 reference

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Structure and evolution of transcriptional regulatory networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

WebLogo: A Sequence Logo Generator

29 September 2017

1 reference

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The MerR family of transcriptional regulators.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

The enigmatic Escherichia coli fadE gene is yafH.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

TetR family member psrA directly binds the Pseudomonas rpoS and psrA promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Regulation of rpoS gene expression in Pseudomonas: involvement of a TetR family regulator

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Effect of temperature and salinity stress on growth and lipid composition of Shewanella gelidimarina

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Prediction of transcription regulatory sites in Archaea by a comparative genomic approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

In vitro transcriptional studies of the bkd operon of Pseudomonas putida: L-branched-chain amino acids and D-leucine are the inducers.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Regulated expression of a repressor protein: FadR activates iclR.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Common enzymes of branched-chain amino acid catabolism in Pseudomonas putida

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Cloning and characterization of a gene (fadR) involved in regulation of fatty acid metabolism in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Purification and properties of short chain acyl-CoA, medium chain acyl-CoA, and isovaleryl-CoA dehydrogenases from human liver

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Site-specific insertion and deletion mutants in the mer promoter-operator region of Tn501; the nineteen base-pair spacer is essential for normal induction of the promoter by MerR.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Genetic analysis of the Tn21 mer operator-promoter

29 September 2017

1 reference

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Study on regulation of long-chain fatty acid metabolism with the use of computer analysis of complete bacterial genomes

29 September 2017

1 reference

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Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation.

27 June 2018

1 reference

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Methylcrotonyl-CoA and geranyl-CoA carboxylases are involved in leucine/isovalerate utilization (Liu) and acyclic terpene utilization (Atu), and are encoded by liuB/liuD and atuC/atuF, in Pseudomonas aeruginosa

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612455

Polyunsaturated fatty acids in the psychrophilic bacterium Shewanella gelidimarina ACAM 456T: molecular species analysis of major phospholipids and biosynthesis of eicosapentaenoic acid

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18820024

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

FadR, transcriptional co-ordination of metabolic expediency

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18820024

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JB.01175-08

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18820024%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18820024%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

1 reference