Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing (Q37036211)

17 August 2017

Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing (English)

1 reference

17 August 2017

1 reference

1 reference

whole genome sequencing

1 reference

Alison J Cody

1

0 references

Kate E Dingle

Kate E Dingle

7

0 references

Noel D McCarthy

Noel D McCarthy

2

0 references

Keith A Jolley

Keith A Jolley

9

0 references

Julian Parkhill

Julian Parkhill

6

0 references

Stephen D Bentley

5

Stephen D Bentley

1 reference

17 August 2017

10

Martin C J Maiden

1 reference

17 August 2017

Melissa Jansen van Rensburg

3

1 reference

17 August 2017

Tomide Isinkaye

4

1 reference

17 August 2017

Ian C J W Bowler

8

1 reference

17 August 2017

language of work or name

English

0 references

publication date

22 May 2013

1 reference

Journal of Clinical Microbiology

17 August 2017

1 reference

17 August 2017

51

1 reference

17 August 2017

8

1 reference

17 August 2017

2526-2534

1 reference

A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter.

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Campylobacter sequence typing databases: applications and future prospects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

A longitudinal 6-year study of the molecular epidemiology of clinical campylobacter isolates in Oxfordshire, United kingdom

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Resolution of a meningococcal disease outbreak from whole-genome sequence data with rapid Web-based analysis methods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Comparison of molecular typing methods useful for detecting clusters of Campylobacter jejuni and C. coli isolates through routine surveillance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Marked campylobacteriosis decline after interventions aimed at poultry, New Zealand

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Rapid pneumococcal evolution in response to clinical interventions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

BIGSdb: Scalable analysis of bacterial genome variation at the population level.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Using the Velvet de novo assembler for short-read sequencing technologies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Molecular epidemiology of Campylobacter jejuni in a geographically isolated country with a uniquely structured poultry industry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Evolution of MRSA during hospital transmission and intercontinental spread

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Campylobacter genotyping to determine the source of human infection.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Campylobacter genotypes from food animals, environmental sources and clinical disease in Scotland 2005/6.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Tracing the source of campylobacteriosis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Bacterial genome sequencing and its use in infectious diseases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Campylobacter jejuni multilocus sequence types in humans, northwest England, 2003-2004.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Application of phylogenetic networks in evolutionary studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Neighbor-net: an agglomerative method for the construction of phylogenetic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Campylobacter jejuni Infections: update on emerging issues and trends

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Assigning the source of human campylobacteriosis in New Zealand: a comparative genetic and epidemiological approach.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Convergence of Campylobacter species: implications for bacterial evolution.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

Multilocus sequence typing of Campylobacter jejuni isolates from New South Wales, Australia.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3719633

The growing UK epidemic of human campylobacteriosis

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23698529

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JCM.00066-13

1 reference

17 August 2017

1 reference

17 August 2017

PubMed publication ID

23698529

1 reference