The minimal preprocessing pipelines for the Human Connectome Project (Q37038976)

17 August 2017

The minimal preprocessing pipelines for the Human Connectome Project (English)

1 reference

17 August 2017

0 references

5

Bruce Fischl

0 references

David C. Van Essen

11

David C Van Essen

0 references

Jonathan R Polimeni

Jonathan R Polimeni

10

0 references

Stamatios N Sotiropoulos

Stamatios N Sotiropoulos

2

0 references

Junqian Xu

Junqian Xu

7

0 references

Saad Jbabdi

Saad Jbabdi

8

0 references

Mark Jenkinson

Mark Jenkinson

12

0 references

Jesper L. R. Andersson

6

Jesper L Andersson

1 reference

17 August 2017

1

Matthew F Glasser

1 reference

17 August 2017

4

Timothy S Coalson

1 reference

17 August 2017

J Anthony Wilson

3

1 reference

17 August 2017

Matthew Webster

9

1 reference

17 August 2017

WU-Minn HCP Consortium

13

1 reference

17 August 2017

language of work or name

English

0 references

publication date

11 May 2013

1 reference

17 August 2017

1 reference

17 August 2017

80

1 reference

17 August 2017

105-124

1 reference

Multimodal surface matching: fast and generalisable cortical registration using discrete optimisation

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Trends and properties of human cerebral cortex: correlations with cortical myelin content

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

What can we learn from T2* maps of the cortex?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Mapping the human cortical surface by combining quantitative T(1) with retinotopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Trouble at rest: how correlation patterns and group differences become distorted after global signal regression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

The Human Connectome Project: a data acquisition perspective.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Continuity, divergence, and the evolution of brain language pathways

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Optimizing the order of operations for movement scrubbing: Comment on Power et al.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Parcellations and hemispheric asymmetries of human cerebral cortex analyzed on surface-based atlases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Accurate and robust brain image alignment using boundary-based registration

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Function-based intersubject alignment of human cortical anatomy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

The global signal and observed anticorrelated resting state brain networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

T1 weighted brain images at 7 Tesla unbiased for Proton Density, T2* contrast and RF coil receive B1 sensitivity with simultaneous vessel visualization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

The impact of global signal regression on resting state correlations: are anti-correlated networks introduced?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Comparing surface-based and volume-based analyses of functional neuroimaging data in patients with schizophrenia

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Brain morphometry with multiecho MPRAGE.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Cortical folding patterns and predicting cytoarchitecture

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Spatio-temporal point-spread function of fMRI signal in human gray matter at 7 Tesla

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Smoothing and cluster thresholding for cortical surface-based group analysis of fMRI data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Advances in functional and structural MR image analysis and implementation as FSL

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Fast robust automated brain extraction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Improved optimization for the robust and accurate linear registration and motion correction of brain images

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Spatial transformations of diffusion tensor magnetic resonance images

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

A global optimisation method for robust affine registration of brain images

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Optimized single-slab three-dimensional spin-echo MR imaging of the brain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

High-resolution intersubject averaging and a coordinate system for the cortical surface

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Cortical Surface-Based Analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

A nonparametric method for automatic correction of intensity nonuniformity in MRI data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Three-dimensional magnetization-prepared rapid gradient-echo imaging (3D MP RAGE).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

An empirical comparison of surface-based and volume-based group studies in neuroimaging

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Steps toward optimizing motion artifact removal in functional connectivity MRI; a reply to Carp

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Measuring structural-functional correspondence: spatial variability of specialised brain regions after macro-anatomical alignment.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

MP2RAGE, a self bias-field corrected sequence for improved segmentation and T1-mapping at high field.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

A genetic algorithm for the topology correction of cortical surfaces

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Actual flip-angle imaging in the pulsed steady state: a method for rapid three-dimensional mapping of the transmitted radiofrequency field.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Spatial accuracy of fMRI activation influenced by volume- and surface-based spatial smoothing techniques.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Quantifying the spatial resolution of the gradient echo and spin echo BOLD response at 3 Tesla

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Improvement of the image quality of T1-weighted anatomical brain scans

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Sequence-independent segmentation of magnetic resonance images.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Analysis and generalized correction of the effect of spatial gradient field distortions in diffusion-weighted imaging

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

An evaluation of the use of magnetic field maps to undistort echo-planar images

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3720813

Correction for geometric distortion in echo planar images from B0 field variations

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23668970

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Methods for Tractography-Driven Surface Registration of Brain Structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23668970

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.NEUROIMAGE.2013.04.127

1 reference

journals/neuroimage/GlasserSWCFAXJWPEJ13

17 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 August 2017

PubMed publication ID

23668970

1 reference