Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis (Q37052612)

17 August 2017

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title

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis (English)

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17 August 2017

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Harry J Flint

1

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17 August 2017

Edward A Bayer

2

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17 August 2017

Marco T Rincon

3

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17 August 2017

Raphael Lamed

4

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17 August 2017

Bryan A White

5

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17 August 2017

language of work or name

English

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publication date

1 February 2008

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Nature Reviews Microbiology

17 August 2017

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17 August 2017

6

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17 August 2017

121-131

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17 August 2017

2

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https://scigraph.springernature.com/pub.10.1038/nrmicro1817

17 August 2017

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Characterization of XYN10B, a modular xylanase from the ruminal protozoan Polyplastron multivesiculatum, with a family 22 carbohydrate-binding module that binds to cellulose

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Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited

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16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep.

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Phylogenetic reconstruction of Gram-positive organisms based on comparative sequence analysis of molecular chaperones from the ruminal microorganism Ruminococcus flavefaciens FD-1

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Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche

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Cellulosomes-structure and ultrastructure.

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A bifunctional enzyme, with separate xylanase and beta(1,3-1,4)-glucanase domains, encoded by the xynD gene of Ruminococcus flavefaciens

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31 March 2020

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EndB, a multidomain family 44 cellulase from Ruminococcus flavefaciens 17, binds to cellulose via a novel cellulose-binding module and to another R. flavefaciens protein via a dockerin domain

31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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Interaction between H2-producing and non-H2-producing cellulolytic bacteria from the human colon

31 March 2020

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Characterization of the xylan-degrading microbial community from human faeces.

31 March 2020

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A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis

31 March 2020

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Biochemical evidence that starch breakdown by Bacteroides thetaiotaomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes

31 March 2020

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A Bacteroides thetaiotaomicron outer membrane protein that is essential for utilization of maltooligosaccharides and starch

31 March 2020

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Characterization of four outer membrane proteins that play a role in utilization of starch by Bacteroides thetaiotaomicron

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron

31 March 2020

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Contribution of a neopullulanase, a pullulanase, and an alpha-glucosidase to growth of Bacteroides thetaiotaomicron on starch

31 March 2020

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Characterization of the primary starch utilization operon in the obligate anaerobe Bacteroides fragilis: Regulation by carbon source and oxygen

31 March 2020

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31 March 2020

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A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism

31 March 2020

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Identification and characterization of a Bacteroides gene, csuF, which encodes an outer membrane protein that is essential for growth on chondroitin sulfate

31 March 2020

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Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Involvement of the multidomain regulatory protein XynR in positive control of xylanase gene expression in the ruminal anaerobe Prevotella bryantii B(1)4.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1817

Medium- to large-sized xylo-oligosaccharides are responsible for xylanase induction in Prevotella bryantii B14.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Degradation and utilization of xylans by the rumen anaerobe Prevotella bryantii (formerly P. ruminicola subsp. brevis) B(1)4

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Glycoside hydrolases and glycosyltransferases: families and functional modules

31 March 2020

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A xylanase produced by the rumen anaerobic protozoan Polyplastron multivesiculatum shows close sequence similarity to family 11 xylanases from gram-positive bacteria.

31 March 2020

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Homologous catalytic domains in a rumen fungal xylanase: evidence for gene duplication and prokaryotic origin

31 March 2020

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Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment

31 March 2020

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Evolution of catalytic proteins or on the origin of enzyme species by means of natural selection

31 March 2020

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Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Starch utilization by the human large intestinal microflora

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Cell-associated alpha-amylases of butyrate-producing Firmicute bacteria from the human colon.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

31 March 2020

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pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon

31 March 2020

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In vitro kinetic analysis of oligofructose consumption by Bacteroides and Bifidobacterium spp. indicates different degradation mechanisms

31 March 2020

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Cellulase, clostridia, and ethanol

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Anaerobic bioconversion of cellulose by Ruminococcus albus, Methanobrevibacter smithii, and Methanosarcina barkeri

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1817

Production of succinate from glucose, cellobiose, and various cellulosic materials by the ruminal anaerobic bacteria Fibrobacter succinogenes and Ruminococcus flavefaciens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1817

Advanced anaerobic bioconversion of lignocellulosic waste for bioregenerative life support following thermal water treatment and biodegradation by Fibrobacter succinogenes

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Action of designer cellulosomes on homogeneous versus complex substrates: controlled incorporation of three distinct enzymes into a defined trifunctional scaffoldin.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Carbohydrate binding modules: biochemical properties and novel applications

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Enzyme technology: an overview

31 March 2020

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Cellulases and related enzymes in biotechnology

31 March 2020

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Metagenomic analysis of the human distal gut microbiome

31 March 2020

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Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Direct cloning of genes encoding novel xylanases from the human gut.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

A multifunctional hybrid glycosyl hydrolase discovered in an uncultured microbial consortium from ruminant gut.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1817

Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

31 March 2020

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Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Genome sequencing in microfabricated high-density picolitre reactors

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Extensive DNA Inversions in the B. fragilis Genome Control Variable Gene Expression

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

Synergism in degradation and utilization of intact forage cellulose, hemicellulose, and pectin by three pure cultures of ruminal bacteria

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

7 January 2021

Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

7 January 2021

Assessment of the endo-1,4-beta-glucanase components of Ruminococcus flavefaciens FD-1.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1817

7 January 2021

A xylan hydrolase gene cluster in Prevotella ruminicola B(1)4: sequence relationships, synergistic interactions, and oxygen sensitivity of a novel enzyme with exoxylanase and beta-(1,4)-xylosidase activities.

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https://api.crossref.org/works/10.1038%2FNRMICRO1817

7 January 2021

Identifiers

DOI

10.1038/NRMICRO1817

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17 August 2017

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