Mechanisms by which herpes simplex virus DNA polymerase limits translesion synthesis through abasic sites (Q37183424)

18 August 2017

Mechanisms by which herpes simplex virus DNA polymerase limits translesion synthesis through abasic sites (English)

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18 August 2017

Yali Zhu

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18 August 2017

Liping Song

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2

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18 August 2017

Jason Stroud

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3

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18 August 2017

Deborah S Parris

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4

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18 August 2017

27 September 2007

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18 August 2017

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18 August 2017

7

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18 August 2017

1

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18 August 2017

95-107

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describes a project that uses

18 August 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3777399/fullTextXML

inferred from PubMed Central ID database lookup

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6 September 2017

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Multiple solutions to inefficient lesion bypass by T7 DNA polymerase.

6 September 2017

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DNA repair proteins affect the lifecycle of herpes simplex virus 1.

6 September 2017

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6 September 2017

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Proteomics of herpes simplex virus replication compartments: association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8.

6 September 2017

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Recruitment of cellular recombination and repair proteins to sites of herpes simplex virus type 1 DNA replication is dependent on the composition of viral proteins within prereplicative sites and correlates with the induction of the DNA damage respo

6 September 2017

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The role of DNA recombination in herpes simplex virus DNA replication.

6 September 2017

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Herpes simplex virus type-1: a model for genome transactions

6 September 2017

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6 September 2017

Herpes Virus Replication

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Evidence against a simple tethering model for enhancement of herpes simplex virus DNA polymerase processivity by accessory protein UL42.

6 September 2017

1 reference

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UvsW protein regulates bacteriophage T4 origin-dependent replication by unwinding R-loops

6 September 2017

1 reference

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Quality control by DNA repair

6 September 2017

1 reference

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Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex

6 September 2017

1 reference

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Endogenous apurinic/apyrimidinic sites in genomic DNA of mammalian tissues

6 September 2017

1 reference

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Evolution of viral DNA-dependent DNA polymerases

6 September 2017

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Highly sensitive apurinic/apyrimidinic site assay can detect spontaneous and chemically induced depurination under physiological conditions

6 September 2017

1 reference

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Bacteriophage T4 UvsW protein is a helicase involved in recombination, repair and the regulation of DNA replication origins

6 September 2017

1 reference

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Infidelity of DNA synthesis associated with bypass of apurinic sites

6 September 2017

1 reference

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A new epistasis group for the repair of DNA damage in bacteriophage T4: replication repair.

6 September 2017

1 reference

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Human DNA polymerase alpha gene expression is cell proliferation dependent and its primary structure is similar to both prokaryotic and eukaryotic replicative DNA polymerases

6 September 2017

1 reference

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Identification of the coding sequence for herpes simplex virus uracil-DNA glycosylase

6 September 2017

1 reference

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Purification of the herpes simplex virus type 1 65-kilodalton DNA-binding protein: properties of the protein and evidence of its association with the virus-encoded DNA polymerase.

6 September 2017

1 reference

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The herpes simplex virus type 1 UL42 gene product: a subunit of DNA polymerase that functions to increase processivity

6 September 2017

1 reference

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Kinetic partitioning between the exonuclease and polymerase sites in DNA error correction

6 September 2017

1 reference

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Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

The herpes simplex virus type 1 DNA polymerase processivity factor increases fidelity without altering pre-steady-state rate constants for polymerization or excision

6 September 2017

1 reference

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Compilation, alignment, and phylogenetic relationships of DNA polymerases

14 September 2017

1 reference

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Hydroxylamine mutagenesis of HSV DNA and DNA fragments: Introduction of mutations into selected regions of the viral genome

14 September 2017

1 reference

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Defective DNA replication and repair associated with decreases in deoxyribonucleotide pools in a mouse cell mutant with thermolabile ubiquitin-activating enzyme E1.

14 September 2017

1 reference

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Herpes simplex virus type 1 DNA polymerase. Mutational analysis of the 3'-5'-exonuclease domain

28 September 2017

1 reference

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Mutations within conserved motifs in the 3'-5' exonuclease domain of herpes simplex virus DNA polymerase

28 September 2017

1 reference

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Accessory proteins assist exonuclease-deficient bacteriophage T4 DNA polymerase in replicating past an abasic site

28 September 2017

1 reference

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Translesional synthesis on DNA templates containing a single abasic site. A mechanistic study of the "A rule".

26 June 2018

1 reference

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Induction of uracil-DNA glycosylase and dUTP nucleotidohydrolase activity in herpes simplex virus-infected human cells

26 June 2018

1 reference

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Nucleotide insertion kinetics opposite abasic lesions in DNA.

26 June 2018

1 reference

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Gene UL2 of herpes simplex virus type 1 encodes a uracil-DNA glycosylase

26 June 2018

1 reference

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Functional interaction between the herpes simplex-1 DNA polymerase and UL42 protein.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

A novel functional domain of an alpha-like DNA polymerase. The binding site on the herpes simplex virus polymerase for the viral UL42 protein

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Crystal structure of the herpes simplex virus 1 DNA polymerase

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

UvsX recombinase and Dda helicase rescue stalled bacteriophage T4 DNA replication forks in vitro

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

On the role of proofreading exonuclease in bypass of a 1,2 d(GpG) cisplatin adduct by the herpes simplex virus-1 DNA polymerase

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Inactivation of the 3'-5' exonuclease of the replicative T4 DNA polymerase allows translesion DNA synthesis at an abasic site

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Contribution of the 3'- to 5'-exonuclease activity of herpes simplex virus type 1 DNA polymerase to the fidelity of DNA synthesis

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Properties of Bacteriophage T4 Proteins Deficient in Replication Repair

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Dynamics of translesion DNA synthesis catalyzed by the bacteriophage T4 exonuclease-deficient DNA polymerase

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

In vitro selection of sequence contexts which enhance bypass of abasic sites and tetrahydrofuran by T4 DNA polymerase holoenzyme.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Determination of deoxyribonucleoside triphosphate pool sizes in ribonucleotide reductase cDNA transfected human KB cells

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Physical mapping of herpes simplex virus type 1 ts mutants by marker rescue: Correlation of the physical and genetic maps

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777399

Evaluating the Effects of Enhanced Processivity and Metal Ions on Translesion DNA Replication Catalyzed by the Bacteriophage T4 DNA Polymerase

3 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17904428

12 December 2020

inferred from PubMed ID database lookup

Coding properties of poly(deoxycytidylic acid) templates containing uracil or apyrimidinic sites: in vitro modulation of mutagenesis by deoxyribonucleic acid repair enzymes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17904428

12 December 2020

inferred from PubMed ID database lookup

Evidence favouring the hypothesis of a conserved 3'-5' exonuclease active site in DNA-dependent DNA polymerases

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17904428

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/J.DNAREP.2007.08.001

1 reference

18 August 2017

1 reference

18 August 2017

PubMed publication ID

17904428

1 reference