VIPERdb2: an enhanced and web API enabled relational database for structural virology (Q37202425)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

title

VIPERdb2: an enhanced and web API enabled relational database for structural virology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

0 references

0 references

Mauricio Carrillo-Tripp

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Sangita Venkataraman

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Gabriel C. Lander

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

author name string

Craig M Shepherd

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Ian A Borelli

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Padmaja Natarajan

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

John E Johnson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Charles L Brooks

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Vijay S Reddy

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

language of work or name

English

0 references

publication date

3 November 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

volume

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

issue

Database issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

page(s)

D436-42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

A note on difficult structure alignment problems.

25 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

VIPERdb: a relational database for structural virology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

Exploring icosahedral virus structures with VIPER.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

TM-align: a protein structure alignment algorithm based on the TM-score

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

UCSF Chimera--a visualization system for exploratory research and analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

A general method to quantify quasi-equivalence in icosahedral viruses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

STRAP: editor for STRuctural Alignments of Proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

6 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

Knowledge-based protein secondary structure assignment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

Multiple protein structure alignment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

MUSTANG: a multiple structural alignment algorithm.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

A novel method to map and compare protein-protein interactions in spherical viral capsids.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

A discrete view on fold space.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

Extent of protein-protein interactions and quasi-equivalence in viral capsids

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

3DCoffee: combining protein sequences and structures within multiple sequence alignments

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686430

3 September 2018

Identifiers

DOI

10.1093/NAR/GKN840

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/Carrillo-TrippSBVLNJBR09

25 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18981051%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference