Two-pass alignment improves novel splice junction quantification (Q37220605)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26519505%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Two-pass alignment improves novel splice junction quantification (English)

1 reference

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28 February 2020

2

1 reference

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28 February 2020

Saravana M Dhanasekaran

3

1 reference

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28 February 2020

author name string

Brendan A Veeneman

1

1 reference

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28 February 2020

Arul M Chinnaiyan

4

1 reference

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28 February 2020

Alexey I Nesvizhskii

5

1 reference

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28 February 2020

language of work or name

English

0 references

publication date

30 October 2015

1 reference

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28 February 2020

number of pages

7

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based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

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28 February 2020

volume

32

1 reference

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28 February 2020

issue

1

1 reference

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28 February 2020

page(s)

43-49

1 reference

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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

28 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

Comprehensive molecular profiling of lung adenocarcinoma

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

FineSplice, enhanced splice junction detection and quantification: a novel pipeline based on the assessment of diverse RNA-Seq alignment solutions.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

Assessment of transcript reconstruction methods for RNA-seq

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

Systematic evaluation of spliced alignment programs for RNA-seq data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

STAR: ultrafast universal RNA-seq aligner

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

The transcriptional landscape and mutational profile of lung adenocarcinoma.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

Landscape of transcription in human cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

Statistical inferences for isoform expression in RNA-Seq

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

The transcriptional landscape of the yeast genome defined by RNA sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5006238

10.1093/BIOINFORMATICS/BTV642

6 September 2017

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26519505%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/VeenemanSDCN16

28 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26519505%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

26519505

1 reference