Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place (Q37247552)

19 August 2017

Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place (English)

1 reference

19 August 2017

Jane Shelby Richardson

6

object named as

Jane S Richardson

0 references

Daniel A. Keedy

object named as

Daniel A Keedy

3

0 references

David C. Richardson

5

object named as

David C Richardson

1 reference

19 August 2017

1

Jeffrey J Headd

1 reference

19 August 2017

Robert M Immormino

2

1 reference

PMC publication ID

2704614

19 August 2017

Paul Emsley

4

1 reference

19 August 2017

11 November 2008

1 reference

Journal of Structural and Functional Genomics

19 August 2017

11

0 references

published in

1 reference

19 August 2017

10

1 reference

19 August 2017

1

1 reference

19 August 2017

83-93

1 reference

Dissecting protein-RNA recognition sites

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

The backrub motion: how protein backbone shrugs when a sidechain dances

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

A test of enhancing model accuracy in high-throughput crystallography

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Real-space protein-model completion: an inverse-kinematics approach.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Coot: model-building tools for molecular graphics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

ARP/wARP and automatic interpretation of protein electron density maps

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Automated main-chain model building by template matching and iterative fragment extension

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

PHENIX: building new software for automated crystallographic structure determination

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

The penultimate rotamer library

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

6 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

WHAT IF: a molecular modeling and drug design program

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Improved methods for building protein models in electron density maps and the location of errors in these models

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

A knowledge-driven approach for crystallographic protein model completion

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

Algorithms for deriving crystallographic space-group information.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2704614

10.1007/S10969-008-9045-8

3 September 2018

Identifiers

DOI

1 reference

19 August 2017

1 reference

PMC publication ID

2704614

19 August 2017

PubMed publication ID

19002604

1 reference

PMC publication ID

2704614