A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control (Q37254045)

19 August 2017

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control (English)

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19 August 2017

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19 August 2017

23

Zoltán Kutalik

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19 August 2017

Viktor Müller

25

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Christoph Lippert

Christoph Lippert

21

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Stephen J. O'Brien

Stephen J O'Brien

18

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Paul J. McLaren

Paul J McLaren

4

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Chanson J Brumme

Chanson J Brumme

3

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Cecilio Lopez-Galindez

Cecilio López-Galíndez

10

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Jacques Fellay

Jacques Fellay

29

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Javier Martinez-Picado

Javier Martinez-Picado

8

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Zabrina L Brumme

Zabrina L Brumme

5

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Huldrych F Günthard

Huldrych F Günthard

13

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Thomas Klimkait

16

Thomas Klimkait

1 reference

19 August 2017

17

Sabine Yerly

1 reference

19 August 2017

14

Enos Bernasconi

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19 August 2017

28

Amalio Telenti

1 reference

19 August 2017

Andri Rauch

12

1 reference

ORCID Public Data File 2021

Judith Dalmau

9

Judith Dalmau

1 reference

19 August 2017

István Bartha

1

1 reference

19 August 2017

Jonathan M Carlson

2

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19 August 2017

Mina John

6

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19 August 2017

David W Haas

7

1 reference

19 August 2017

Concepción Casado

11

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19 August 2017

Pietro Vernazza

15

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19 August 2017

Jennifer Listgarten

19

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19 August 2017

Nicolo Fusi

22

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19 August 2017

Todd M Allen

24

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19 August 2017

P Richard Harrigan

26

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19 August 2017

David Heckerman

27

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19 August 2017

language of work or name

English

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publication date

29 October 2013

1 reference

19 August 2017

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19 August 2017

2

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19 August 2017

e01123

1 reference

Imputing amino acid polymorphisms in human leukocyte antigens

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Antiretroviral treatment of adult HIV infection: 2012 recommendations of the International Antiviral Society-USA panel.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Early HLA-B*57-restricted CD8+ T lymphocyte responses predict HIV-1 disease progression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Host genes important to HIV replication and evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Disease tolerance as a defense strategy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Lack of association between HLA class II alleles and in vitro replication capacities of recombinant viruses encoding HIV-1 subtype C Gag-protease from chronically infected individuals

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Human metabolic individuality in biomedical and pharmaceutical research

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Translation of HLA-HIV associations to the cellular level: HIV adapts to inflate CD8 T cell responses against Nef and HLA-adapted variant epitopes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

HIV-1 adaptation to NK-cell-mediated immune pressure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Impact of phenotype definition on genome-wide association signals: empirical evaluation in human immunodeficiency virus type 1 infection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Intermediate phenotypes in psychiatric disorders

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

The major genetic determinants of HIV-1 control affect HLA class I peptide presentation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

A large-scale, consortium-based genomewide association study of asthma

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

TRIM5 suppresses cross-species transmission of a primate immunodeficiency virus and selects for emergence of resistant variants in the new species

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Common genetic variation and the control of HIV-1 in humans

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Adaptation of HIV-1 to human leukocyte antigen class I

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Mechanisms of HIV non-progression; robust and sustained CD4+ T-cell proliferative responses to p24 antigen correlate with control of viraemia and lack of disease progression after long-term transfusion-acquired HIV-1 infection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an International AIDS Society-USA panel

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

HLA alleles associated with slow progression to AIDS truly prefer to present HIV-1 p24.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

PLINK: a tool set for whole-genome association and population-based linkage analyses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

A whole-genome association study of major determinants for host control of HIV-1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Adaptation of HIV-1 to its human host.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Principal components analysis corrects for stratification in genome-wide association studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

An automated genotyping system for analysis of HIV-1 and other microbial sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Widespread impact of HLA restriction on immune control and escape pathways of HIV-1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Susceptibility and adaptation to human TRIM5α alleles at positive selected sites in HIV-1 capsid.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Cohort profile: the Swiss HIV Cohort study

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Evolutionary trajectories of primate genes involved in HIV pathogenesis.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitope

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3807812

Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.01123

Evolution and transmission of stable CTL escape mutations in HIV infection

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.01123

A combination of defective DNA and protective host factors are found in a set of HIV-1 ancestral LTNPs

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.01123

Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24171102

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.01123

1 reference

19 August 2017

1 reference

19 August 2017

1 reference