DNA conformations in mismatch repair probed in solution by X-ray scattering from gold nanocrystals. (Q37256043)

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27 February 2020

title

DNA conformations in mismatch repair probed in solution by X-ray scattering from gold nanocrystals (English)

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X-ray scattering techniques

27 February 2020

main subject

1 reference

1 reference

1 reference

8

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Chi-Lin Tsai

2

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Marc Mendillo

4

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Christopher D. Putnam

9

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John A. Tainer

11

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author name string

Greg L Hura

1

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27 February 2020

Shelley A Claridge

3

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Jessica M Smith

5

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Gareth J Williams

6

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Alexander J Mastroianni

7

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Richard D Kolodner

10

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language of work or name

English

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publication date

7 October 2013

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Proceedings of the National Academy of Sciences of the United States of America

27 February 2020

published in

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volume

110

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issue

43

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page(s)

17308-17313

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Comprehensive macromolecular conformations mapped by quantitative SAXS analyses

27 February 2020

cites work

1 reference

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Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source

6 September 2017

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ATP alters the diffusion mechanics of MutS on mismatched DNA.

6 September 2017

1 reference

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Large conformational changes in MutS during DNA scanning, mismatch recognition and repair signalling

6 September 2017

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Mechanism of mismatch recognition revealed by human MutSβ bound to unpaired DNA loops

6 September 2017

1 reference

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Visualization of eukaryotic DNA mismatch repair reveals distinct recognition and repair intermediates.

6 September 2017

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Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily

6 September 2017

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Chemical trapping of the dynamic MutS-MutL complex formed in DNA mismatch repair in Escherichia coli

6 September 2017

1 reference

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MutS switches between two fundamentally distinct clamps during mismatch repair

6 September 2017

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Surfing on a new wave of single-molecule fluorescence methods

6 September 2017

1 reference

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Probing DNA- and ATP-mediated conformational changes in the MutS family of mispair recognition proteins using deuterium exchange mass spectrometry

6 September 2017

1 reference

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Interaction between the Msh2 and Msh6 nucleotide-binding sites in the Saccharomyces cerevisiae Msh2-Msh6 complex

6 September 2017

1 reference

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A conserved MutS homolog connector domain interface interacts with MutL homologs

6 September 2017

1 reference

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Probing the conformational distributions of subpersistence length DNA.

6 September 2017

1 reference

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Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)

6 September 2017

1 reference

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The nucleotide binding dynamics of human MSH2-MSH3 are lesion dependent

6 September 2017

1 reference

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A molecular ruler for measuring quantitative distance distributions

6 September 2017

1 reference

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Mre11 Dimers Coordinate DNA End Bridging and Nuclease Processing in Double-Strand-Break Repair

6 September 2017

1 reference

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Mechanisms and functions of DNA mismatch repair

6 September 2017

1 reference

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X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

6 September 2017

1 reference

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Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.

6 September 2017

1 reference

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Recognition of DNA damage by the Rad4 nucleotide excision repair protein

6 September 2017

1 reference

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Protein roadblocks and helix discontinuities are barriers to the initiation of mismatch repair

6 September 2017

1 reference

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Structure of the human MutSalpha DNA lesion recognition complex

6 September 2017

1 reference

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Escherichia coli MutS tetramerization domain structure reveals that stable dimers but not tetramers are essential for DNA mismatch repair in vivo

6 September 2017

1 reference

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Structural and functional analysis of the MutS C-terminal tetramerization domain

6 September 2017

1 reference

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DNA mismatch repair: functions and mechanisms

6 September 2017

1 reference

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6 September 2017

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Analysis of the interaction between the Saccharomyces cerevisiae MSH2-MSH6 and MLH1-PMS1 complexes with DNA using a reversible DNA end-blocking system.

6 September 2017

1 reference

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A PELDOR-based nanometer distance ruler for oligonucleotides

6 September 2017

1 reference

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DNA bending and unbending by MutS govern mismatch recognition and specificity

6 September 2017

1 reference

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Uracil-DNA glycosylase acts by substrate autocatalysis

6 September 2017

1 reference

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The crystal structure of DNA mismatch repair protein MutS binding to a G x T mismatch

6 September 2017

1 reference

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Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA

6 September 2017

1 reference

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hMSH2-hMSH6 forms a hydrolysis-independent sliding clamp on mismatched DNA

6 September 2017

1 reference

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DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Enhancement of MSH2-MSH3-mediated mismatch recognition by the yeast MLH1-PMS1 complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Mismatch repair in replication fidelity, genetic recombination, and cancer biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Single-step purifications of His6-MutH, His6-MutL and His6-MutS repair proteins of escherichia coli K-12.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Biochemistry and genetics of eukaryotic mismatch repair

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Anomalous x-ray scattering from terbium-labeled parvalbumin in solution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Single-molecule FRET TACKLE reveals highly dynamic mismatched DNA-MutS complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Stoichiometry of MutS and MutL at unrepaired mismatches in vivo suggests a mechanism of repair

14 September 2017

1 reference

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Remeasuring the double helix

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Interaction studies of muts and mutl with DNA containing the major cisplatin lesion and its mismatched counterpart under equilibrium and nonequilibrium conditions

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

ATP increases the affinity between MutS ATPase domains. Implications for ATP hydrolysis and conformational changes.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

The coordinated functions of the E. coli MutS and MutL proteins in mismatch repair

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

DNA chain length dependence of formation and dynamics of hMutSalpha.hMutLalpha.heteroduplex complexes

3 September 2018

1 reference

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Mismatch repair, molecular switches, and signal transduction

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808630

Interaction of Escherichia coli MutS and MutL at a DNA mismatch

3 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24101514

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Assembly and molecular activities of the MutS tetramer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24101514

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determination of the distance between heavy-atom markers in haemoglobin and histidine decarboxylase in solution by small-angle x-ray scattering

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24101514

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1308595110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24101514%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

0 references

1 reference

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27 February 2020

PubMed publication ID

24101514

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24101514%20AND%20SRC:MED&resulttype=core&format=json