Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies (Q37327539)

19 August 2017

Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies (English)

1 reference

19 August 2017

0 references

4

Olga G Troyanskaya

1 reference

19 August 2017

2

Arjun Krishnan

1 reference

19 August 2017

3

Qian Zhu

1 reference

19 August 2017

Young-suk Lee

1

1 reference

PMCID

3834796

19 August 2017

language of work or name

English

0 references

publication date

12 September 2013

1 reference

19 August 2017

1 reference

19 August 2017

29

1 reference

19 August 2017

23

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19 August 2017

3036-3044

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

19 August 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Comprehensive molecular portraits of human breast tumours

6 September 2017

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6 September 2017

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The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

6 September 2017

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Making sense out of massive data by going beyond differential expression

6 September 2017

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Subtype and pathway specific responses to anticancer compounds in breast cancer

6 September 2017

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ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression

6 September 2017

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PILGRM: an interactive data-driven discovery platform for expert biologists

6 September 2017

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The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

6 September 2017

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Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components

6 September 2017

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NCBI GEO: archive for functional genomics data sets--10 years on

6 September 2017

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The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Tackling the widespread and critical impact of batch effects in high-throughput data

6 September 2017

1 reference

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A global map of human gene expression

6 September 2017

1 reference

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Bayesian approach to transforming public gene expression repositories into disease diagnosis databases

6 September 2017

1 reference

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Frozen robust multiarray analysis (fRMA).

6 September 2017

1 reference

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Analysis of biological processes and diseases using text mining approaches

6 September 2017

1 reference

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TopHat: discovering splice junctions with RNA-Seq

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Predicting gene function in a hierarchical context with an ensemble of classifiers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

A gene expression bar code for microarray data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Cytokine-like 1 (Cytl1) regulates the chondrogenesis of mesenchymal cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Hierarchical multi-label prediction of gene function

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Gene expression profiling differentiates germ cell tumors from other cancers and defines subtype-specific signatures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

PAGE: parametric analysis of gene set enrichment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

A DNA microarray survey of gene expression in normal human tissues

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

The Wnt signaling pathway in development and disease

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Maintenance of pluripotency in human and mouse embryonic stem cells through activation of Wnt signaling by a pharmacological GSK-3-specific inhibitor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Diagnosis of multiple cancer types by shrunken centroids of gene expression

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Multiclass cancer diagnosis using tumor gene expression signatures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Missing value estimation methods for DNA microarrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Gene ontology: tool for the unification of biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Wnt signaling in oncogenesis and embryogenesis--a look outside the nucleus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Maintenance of human embryonic stem cells in animal serum- and feeder layer-free culture conditions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Culture and maintenance of human embryonic stem cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Glycosaminoglycans enhance osteoblast differentiation of bone marrow derived human mesenchymal stem cells

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Exploring the functional landscape of gene expression: directed search of large microarray compendia.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

Robust estimators for expression analysis.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3834796

A Tutorial on Support Vector Machines for Pattern Recognition

2 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT529

Graphical Models for Associations between Variables, some of which are Qualitative and some Quantitative

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT529

The calcium-dependent cell-cell adhesion system regulates inner cell mass formation and cell surface polarization in early mouse development

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24037214

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Effect of different concentrations of amino acids in human serum and follicular fluid on the development of one-cell mouse embryos in vitro

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24037214

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTT529

1 reference

journals/bioinformatics/LeeKZT13

19 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

19 August 2017

1 reference

PMCID

3834796