Fast, adaptive evolution at a bacterial host-resistance locus: the PFam54 gene array in Borrelia burgdorferi (Q37345021)

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30 January 2020

title

Fast, adaptive evolution at a bacterial host-resistance locus: the PFam54 gene array in Borrelia burgdorferi (English)

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30 January 2020

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1 reference

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3

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30 January 2020

Yozen Hernandez

4

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30 January 2020

Benjamin J. Luft

8

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Emmanuel F Mongodin

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30 January 2020

7

Claire M Fraser-Liggett

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30 January 2020

author name string

Ewa Wywial

1

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30 January 2020

James Haven

2

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30 January 2020

Shaneen Singh

5

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30 January 2020

Steven E Schutzer

9

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30 January 2020

Wei-Gang Qiu

10

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language of work or name

English

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publication date

6 June 2009

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30 January 2020

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30 January 2020

volume

445

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issue

1-2

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page(s)

26-37

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Protein structure homology modeling using SWISS-MODEL workspace.

30 January 2020

cites work

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Identification and characterization of the factor H and FHL-1 binding complement regulator-acquiring surface protein 1 of the Lyme disease spirochete Borrelia spielmanii sp. nov.

6 September 2017

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Wide distribution of a high-virulence Borrelia burgdorferi clone in Europe and North America.

6 September 2017

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MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi

6 September 2017

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Borrelia burgdorferi surface-localized proteins expressed during persistent murine infection are conserved among diverse Borrelia spp.

6 September 2017

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Lyme borreliosis spirochete Erp proteins, their known host ligands, and potential roles in mammalian infection

6 September 2017

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Borrelia burgdorferi complement regulator-acquiring surface proteins (BbCRASPs): Expression patterns during the mammal-tick infection cycle

6 September 2017

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6 September 2017

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Lyme disease--United States, 2003-2005.

6 September 2017

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PAML 4: phylogenetic analysis by maximum likelihood

6 September 2017

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Prediction of side-chain conformations on protein surfaces

6 September 2017

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Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity

6 September 2017

1 reference

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Analyses of homo-oligomer interfaces of proteins from the complementarity of molecular surface, electrostatic potential and hydrophobicity

6 September 2017

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Epidemic spread of Lyme borreliosis, northeastern United States

6 September 2017

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Evolutionary trace report_maker: a new type of service for comparative analysis of proteins

6 September 2017

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Identification of Borrelia burgdorferi outer surface proteins

6 September 2017

1 reference

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Borrelia burgdorferi regulates expression of complement regulator-acquiring surface protein 1 during the mammal-tick infection cycle.

6 September 2017

1 reference

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ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

6 September 2017

1 reference

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Lyme borreliosis in Europe and North America

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Bayes empirical bayes inference of amino acid sites under positive selection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Comparative analysis of the Borrelia garinii genome

6 September 2017

1 reference

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ospC diversity in Borrelia burgdorferi: different hosts are different niches

6 September 2017

1 reference

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A graph-theory algorithm for rapid protein side-chain prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Phylogenomics: intersection of evolution and genomics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Immune evasion of Borrelia burgdorferi: mapping of a complement-inhibitor factor H-binding site of BbCRASP-3, a novel member of the Erp protein family

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

The Ka/Ks ratio: diagnosing the form of sequence evolution

6 September 2017

2 references

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6 September 2017

12 December 2020

Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction

1 reference

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Host association of Borrelia burgdorferi sensu lato--the key role of host complement

6 September 2017

1 reference

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Differential binding of host complement inhibitor factor H by Borrelia burgdorferi Erp surface proteins: a possible mechanism underlying the expansive host range of Lyme disease spirochetes

6 September 2017

1 reference

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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

6 September 2017

1 reference

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Codon-substitution models for heterogeneous selection pressure at amino acid sites

6 September 2017

1 reference

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Homology a personal view on some of the problems

6 September 2017

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A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi

6 September 2017

1 reference

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Molecular epidemiology of the aetiological agents of Lyme borreliosis

6 September 2017

1 reference

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Genetic diversity of ospC in a local population of Borrelia burgdorferi sensu stricto

6 September 2017

1 reference

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Comparative protein modeling by satisfaction of spatial restraints

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Antigenic variation in Lyme disease borreliae by promiscuous recombination of VMP-like sequence cassettes

6 September 2017

1 reference

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Putative coiled-coil structural elements of the BBA68 protein of Lyme disease spirochetes are required for formation of its factor H binding site.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Evidence that the BBA68 protein (BbCRASP-1) of the Lyme disease spirochetes does not contribute to factor H-mediated immune evasion in humans and other animals

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Identification and functional characterization of complement regulator-acquiring surface protein 1 of the Lyme disease spirochetes Borrelia afzelii and Borrelia garinii

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Binding of human complement regulators FHL-1 and factor H to CRASP-1 orthologs of Borrelia burgdorferi

26 June 2018

1 reference

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Structure-function mapping of BbCRASP-1, the key complement factor H and FHL-1 binding protein of Borrelia burgdorferi.

2 September 2018

1 reference

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Complement regulator-acquiring surface protein 1 imparts resistance to human serum in Borrelia burgdorferi

2 September 2018

1 reference

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A novel fold for the factor H-binding protein BbCRASP-1 of Borrelia burgdorferi.

2 September 2018

1 reference

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Lysine-dependent multipoint binding of the Borrelia burgdorferi virulence factor outer surface protein E to the C terminus of factor H.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Complement Resistance of Borrelia burgdorferi Correlates with the Expression of BbCRASP-1, a Novel Linear Plasmid-encoded Surface Protein That Interacts with Human Factor H and FHL-1 and Is Unrelated to Erp Proteins

2 September 2018

1 reference

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NOTUNG: a program for dating gene duplications and optimizing gene family trees

2 September 2018

1 reference

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Mutational analyses of the BbCRASP-1 protein of Borrelia burgdorferi identify residues relevant for the architecture and binding of host complement regulators FHL-1 and factor H

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743244

Natural selection in the TLR-related genes in the course of primate evolution

3 December 2018

1 reference

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Borrelia burgdorferi expression of the bba64, bba65, bba66, and bba73 genes in tissues during persistent infection in mice

3 December 2018

1 reference

PubMed

12 December 2020

Immune evasion of Borrelia burgdorferi by acquisition of human complement regulators FHL-1/reconectin and Factor H

1 reference

PubMed

12 December 2020

Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling

1 reference

PubMed

12 December 2020

10.1016/J.GENE.2009.05.017

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19505540%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19505540%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

PubMed publication ID

19505540

1 reference