SKN-1 domain folding and basic region monomer stabilization upon DNA binding (Q37367381)

20 August 2017

SKN-1 domain folding and basic region monomer stabilization upon DNA binding (English)

1 reference

BZIP domain-containing protein;Protein skinhead-1 CELE_T19E7.2

20 August 2017

1 reference

GOA release 2020-03-11

author name string

A S Carroll

1

1 reference

20 August 2017

D E Gilbert

2

1 reference

20 August 2017

X Liu

3

1 reference

20 August 2017

J W Cheung

4

1 reference

20 August 2017

J E Michnowicz

5

1 reference

20 August 2017

G Wagner

6

1 reference

20 August 2017

T E Ellenberger

7

1 reference

20 August 2017

T K Blackwell

8

1 reference

20 August 2017

1 September 1997

1 reference

20 August 2017

1 reference

20 August 2017

11

1 reference

20 August 2017

17

1 reference

20 August 2017

2227-2238

1 reference

Selection of RNA-binding peptides in vivo

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

A structural transition in class II major histocompatibility complex proteins at mildly acidic pH.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Design of a metallo-bZIP protein that discriminates between CRE and AP1 target sites: selection against AP1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Altered specificity of DNA-binding proteins with transition metal dimerization domains

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Identification of C/EBP basic region residues involved in DNA sequence recognition and half-site spacing preference

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Coupling of local folding to site-specific binding of proteins to DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Rules for alpha-helix termination by glycine

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The Basic Subdomain of the c-Jun Oncoprotein. A Joint CD, Fourier-Transform Infrared and NMR Study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Spectroscopic Determination of Tryptophan and Tyrosine in Proteins*

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Amino acid preferences for specific locations at the ends of alpha helices

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Evidence that the leucine zipper is a coiled coil

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Isolation of a recombinant copy of the gene encoding C/EBP

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Helix signals in proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The interaction with DNA of wild-type and mutant fushi tarazu homeodomains

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

A structural taxonomy of DNA-binding domains

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Protein stitchery: design of a protein for selective binding to a specific DNA sequence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Minimum length of a sequence-specific DNA binding peptide

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Secondary structure of proteins through circular dichroism spectroscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Homeodomain-DNA recognition

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Identification of three residues in the basic regions of the bZIP proteins GCN4, C/EBP and TAF-1 that are involved in specific DNA binding.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Capping and alpha-helix stability

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Different sensitivities to acid denaturation within a family of proteins: implications for acid unfolding and membrane translocation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Evidence for a conformational change in a class II major histocompatibility complex molecule occurring in the same pH range where antigen binding is enhanced

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The maternal gene skn-1 encodes a protein that is distributed unequally in early C. elegans embryos

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

RNA recognition by an isolated alpha helix

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Interaction of partially structured states of acidic fibroblast growth factor with phospholipid membranes

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Design of DNA-binding peptides based on the leucine zipper motif

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Evidence of changes in protease sensitivity and subunit exchange rate on DNA binding by C/EBP.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Altered protein conformation on DNA binding by Fos and Jun.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

skn-1, a maternally expressed gene required to specify the fate of ventral blastomeres in the early C. elegans embryo

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Brominated phospholipids as a tool for monitoring the membrane insertion of colicin A.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

The cytoplasmic fragment of the aspartate receptor displays globally dynamic behavior.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Thermal unfolding studies of a leucine zipper domain and its specific DNA complex: implications for scissor's grip recognition

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Studies of synthetic helical peptides using circular dichroism and nuclear magnetic resonance

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275399

Helix stop signals in proteins and peptides: the capping box

2 September 2018

1 reference

12 December 2020

Formation of a monomeric DNA binding domain by Skn-1 bZIP and homeodomain elements

1 reference

12 December 2020

Does the molten globule have a native-like tertiary fold?

1 reference

12 December 2020

Deconstruction of GCN4/GCRE into a monomeric peptide-DNA complex

1 reference

12 December 2020

Immunochemical Analysis of the Structure of Diphtheria Toxin Shows All Three Domains Undergo Structural Changes at Low pH

1 reference

12 December 2020

Disulfide determinants of calcium-induced packing in alpha-lactalbumin

1 reference

12 December 2020

The galvanization of biology: a growing appreciation for the roles of zinc

1 reference

12 December 2020

Packing interactions in the apomyglobin folding intermediate

1 reference

12 December 2020

How molten is the molten globule?

1 reference

12 December 2020

Acid-induced molten globule state of a fully active mutant of human interleukin-6

1 reference

12 December 2020

Certain bZIP peptides bind DNA sequentially as monomers and dimerize on the DNA

1 reference

12 December 2020

Sequence-specific DNA binding by a short peptide dimer

1 reference

12 December 2020

Folding transition in the DMA-binding domain of GCN4 on specific binding to DNA

1 reference

12 December 2020

Solution structure of the basic region from the transcriptional activator GCN4

1 reference

12 December 2020

A 'molten-globule' membrane-insertion intermediate of the pore-forming domain of colicin A

1 reference

12 December 2020

Hydroxyl radical footprinting

1 reference

12 December 2020

Molecular Characterization of Helix-Loop-Helix Peptides

1 reference

12 December 2020

Identifiers

DOI

10.1101/GAD.11.17.2227

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

9303538

1 reference