Mutational analysis of the yeast RNA helicase Sub2p reveals conserved domains required for growth, mRNA export, and genomic stability (Q37371769)

20 August 2017

Mutational analysis of the yeast RNA helicase Sub2p reveals conserved domains required for growth, mRNA export, and genomic stability (English)

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20 August 2017

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1 reference

1

Cyril Saguez

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Chrysa M Latrick

Chrysa M Latrick

5

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Andrea A Putnam

Andrea Putnam

7

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Fernando Alexis Gonzales

Fernando A Gonzales

2

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Eckhard Jankowsky

Eckhard Jankowsky

9

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Ditlev E. Brodersen

Ditlev E Brodersen

10

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Torben Heick Jensen

Torben Heick Jensen

11

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author name string

Manfred Schmid

3

1 reference

20 August 2017

Andreas Bøggild

4

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20 August 2017

Francisco Malagon

6

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20 August 2017

Lee Sanderson

8

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20 August 2017

language of work or name

English

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publication date

20 August 2013

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20 August 2017

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20 August 2017

19

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20 August 2017

10

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20 August 2017

1363-1371

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describes a project that uses

20 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3854527/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The proteins PDIP3 and ZC11A associate with the human TREX complex in an ATP-dependent manner and function in mRNA export

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ATP utilization and RNA conformational rearrangement by DEAD-box proteins

6 September 2017

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Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles

6 September 2017

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ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex

6 September 2017

1 reference

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SF1 and SF2 helicases: family matters

6 September 2017

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Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation

6 September 2017

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A multidimensional chromatography technology for in-depth phosphoproteome analysis

6 September 2017

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Biochemical characterization of the ATPase and helicase activity of UAP56, an essential pre-mRNA splicing and mRNA export factor

6 September 2017

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Gene splicing and mutagenesis by PCR-driven overlap extension

6 September 2017

1 reference

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Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants

6 September 2017

1 reference

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Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA

6 September 2017

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Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

6 September 2017

1 reference

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The DEAD-box protein family of RNA helicases

6 September 2017

1 reference

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ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

6 September 2017

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WebLogo: A Sequence Logo Generator

6 September 2017

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Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

6 September 2017

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Localization of nuclear retained mRNAs in Saccharomyces cerevisiae

6 September 2017

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Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p

6 September 2017

1 reference

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The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability

6 September 2017

1 reference

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TREX is a conserved complex coupling transcription with messenger RNA export

6 September 2017

1 reference

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The DECD box putative ATPase Sub2p is an early mRNA export factor

6 September 2017

1 reference

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Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p

6 September 2017

1 reference

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High-copy-number expression of Sub2p, a member of the RNA helicase superfamily, suppresses hpr1-mediated genomic instability

6 September 2017

1 reference

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A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription

6 September 2017

1 reference

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Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Multiple roles for the yeast SUB2/yUAP56 gene in splicing

6 September 2017

1 reference

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A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

A mutated human homologue to yeast Upf1 protein has a dominant-negative effect on the decay of nonsense-containing mRNAs in mammalian cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination.

6 September 2017

1 reference

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Dominant negative mutants of mammalian translation initiation factor eIF-4A define a critical role for eIF-4F in cap-dependent and cap-independent initiation of translation

6 September 2017

1 reference

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A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance

6 September 2017

1 reference

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Genetic control of intrachromosomal recombination in Saccharomyces cerevisiae. I. Isolation and genetic characterization of hyper-recombination mutations.

6 September 2017

1 reference

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A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae

6 September 2017

1 reference

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HPR1, a novel yeast gene that prevents intrachromosomal excision recombination, shows carboxy-terminal homology to the Saccharomyces cerevisiae TOP1 gene.

6 September 2017

1 reference

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MyHits: a new interactive resource for protein annotation and domain identification

6 September 2017

1 reference

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Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3' end processing factor Pcf11.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

ATP-dependent recruitment of export factor Aly/REF onto intronless mRNAs by RNA helicase UAP56

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Crystal structure of UAP56, a DExD/H-box protein involved in pre-mRNA splicing and mRNA export

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Architecture and nucleic acids recognition mechanism of the THO complex, an mRNP assembly factor

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Keeping mRNPs in check during assembly and nuclear export.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Chapter 10. Estimating nuclear mRNA decay in Saccharomyces cerevisiae.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Bismuth citrate in the quantification of inorganic phosphate and its utility in the determination of membrane-bound phosphatases

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Role of reciprocal exchange, one-ended invasion crossover and single-strand annealing on inverted and direct repeat recombination in yeast: different requirements for the RAD1, RAD10, and RAD52 genes

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

Requirements for chromatin reassembly during transcriptional downregulation of a heat shock gene in Saccharomyces cerevisiae

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854527

3 December 2018

Identifiers

DOI

10.1261/RNA.040048.113

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

23962665

1 reference