Harnessing genomics for evolutionary insights (Q37388142)

20 August 2017

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title

Harnessing genomics for evolutionary insights (English)

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20 August 2017

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2

Patrick Abbot

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20 August 2017

Antonis Rokas

1

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20 August 2017

7 February 2009

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Trends in Ecology & Evolution

20 August 2017

9

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based on heuristic

inferred from page(s)

published in

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20 August 2017

24

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20 August 2017

192-200

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20 August 2017

4

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The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

20 August 2017

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The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

7 January 2021

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The Chlamydomonas genome reveals the evolution of key animal and plant functions

7 January 2021

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Next-generation sequencing transforms today's biology

7 January 2021

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Genome sequencing in microfabricated high-density picolitre reactors

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Whole-genome re-sequencing

7 January 2021

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Parallel confocal detection of single molecules in real time

7 January 2021

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Single-molecule DNA sequencing of a viral genome

7 January 2021

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Sequencing breakthroughs for genomic ecology and evolutionary biology

7 January 2021

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The impact of next-generation sequencing technology on genetics

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

New developments in ancient genomics.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Next-generation DNA sequencing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

A metagenomic survey of microbes in honey bee colony collapse disorder

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

A new arenavirus in a cluster of fatal transplant-associated diseases

7 January 2021

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Parallel genomic evolution and metabolic interdependence in an ancient symbiosis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Accurate multiplex polony sequencing of an evolved bacterial genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Wasp gene expression supports an evolutionary link between maternal behavior and eusociality.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Sequencing and analysis of Neanderthal genomic DNA

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Analysis of one million base pairs of Neanderthal DNA

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Whole-genome sequencing and variant discovery in C. elegans.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Rapid and accurate pyrosequencing of angiosperm plastid genomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

7 January 2021

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Pyrosequencing enumerates and contrasts soil microbial diversity

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Microbial diversity in the deep sea and the underexplored "rare biosphere"

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Using pyrosequencing to shed light on deep mine microbial ecology

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Metagenomic analysis of the human distal gut microbiome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

The complete genome of an individual by massively parallel DNA sequencing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

The evolutionary origin and elaboration of sociality in the aculeate Hymenoptera: maternal effects, sib-social effects, and heterochrony

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Sequencing goes 454 and takes large-scale genomics into the wild

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

The Seven Great Questions of Systematic Biology: An Essential Foundation for Conservation and the Sustainable Use of Biodiversity

7 January 2021

1 reference

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Animal evolution and the molecular signature of radiations compressed in time

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Genome-scale approaches to resolving incongruence in molecular phylogenies

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Bayesian estimation of concordance among gene trees.

7 January 2021

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High-resolution species trees without concatenation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Examining bacterial species under the specter of gene transfer and exchange

7 January 2021

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Pattern pluralism and the Tree of Life hypothesis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

The frailty of adaptive hypotheses for the origins of organismal complexity

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

7 January 2021

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Genome-wide mapping of in vivo protein-DNA interactions

7 January 2021

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

7 January 2021

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Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

7 January 2021

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An analysis of the feasibility of short read sequencing

7 January 2021

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Accounting for bias from sequencing error in population genetic estimates

7 January 2021

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A model of the statistical power of comparative genome sequence analysis

7 January 2021

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Experimental design criteria in phylogenetics: where to add taxa

7 January 2021

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A case for evolutionary genomics and the comprehensive examination of sequence biodiversity.

7 January 2021

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A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

7 January 2021

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Parallel tagged sequencing on the 454 platform

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Base-calling of automated sequencer traces using phred. II. Error probabilities

7 January 2021

1 reference

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Initial sequencing and analysis of the human genome

7 January 2021

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Quality scores and SNP detection in sequencing-by-synthesis systems

7 January 2021

1 reference

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Accuracy and quality of massively parallel DNA pyrosequencing

7 January 2021

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

7 January 2021

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

7 January 2021

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A vision for the future of genomics research

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Bioinformatics challenges of new sequencing technology

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 January 2021

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ALLPATHS: de novo assembly of whole-genome shotgun microreads

7 January 2021

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Short read fragment assembly of bacterial genomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Using quality scores and longer reads improves accuracy of Solexa read mapping

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

MEGAN analysis of metagenomic data

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

MetaSim: a sequencing simulator for genomics and metagenomics

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Uniparental inheritance of organelle genes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Mapping short DNA sequencing reads and calling variants using mapping quality scores

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

The RAST Server: rapid annotations using subsystems technology

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

Tuberculosis. Few mutations divide some drug-resistant TB strains

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

A genome-wide view of the spectrum of spontaneous mutations in yeast.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2008.11.004

10.1016/J.TREE.2008.11.004

7 January 2021

Identifiers

DOI

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20 August 2017

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PubMed ID

19201503