Systems biology: Functional analysis of natural microbial consortia using community proteomics (Q37393761)

20 August 2017

1 reference

title

Systems biology: Functional analysis of natural microbial consortia using community proteomics (English)

1 reference

20 August 2017

4

Jillian F Banfield

1 reference

20 August 2017

Robert L Hettich

3

0 references

Vincent J Denef

series ordinal

2

object named as

Vincent J Denef

1 reference

20 August 2017

Nathan C VerBerkmoes

1

1 reference

20 August 2017

language of work or name

English

0 references

publication date

1 March 2009

1 reference

Nature Reviews Microbiology

20 August 2017

published in

1 reference

20 August 2017

volume

7

1 reference

20 August 2017

issue

3

1 reference

20 August 2017

page(s)

196-205

1 reference

The human microbiome project

20 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Microbial communities and their interactions in soil and rhizosphere ecosystems.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Marine microbial diversity: the tip of the iceberg

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Microbial community genomics in the ocean

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

A vista for microbial ecology and environmental biotechnology.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Wastewater treatment: a model system for microbial ecology

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Microbial communities in acid mine drainage.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Microbial population structures in the deep marine biosphere

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Microbial ecology and evolution: a ribosomal RNA approach

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

A molecular view of microbial diversity and the biosphere

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Proteomics: the move to mixtures

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Analysis of proteins and proteomes by mass spectrometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Multidimensional separations for protein/peptide analysis in the post-genomic era.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Mass spectrometric approaches for characterizing bacterial proteomes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Decoding protein modifications using top-down mass spectrometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Electrospray ionization for mass spectrometry of large biomolecules

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Laser desorption time-of-flight mass spectrometric analysis of transferrin precipitated with antiserum: a unique simple method to identify molecular weight variants

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Sequence analysis of polypeptides by collision activated dissociation on a triple quadrupole mass spectrometer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Protein sequencing by tandem mass spectrometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Contributions of mass spectrometry to peptide and protein structure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Probability-based protein identification by searching sequence databases using mass spectrometry data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

TANDEM: matching proteins with tandem mass spectra

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Mass spectrometry-based proteomics turns quantitative

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Detecting differential and correlated protein expression in label-free shotgun proteomics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Toward a protein profile of Escherichia coli: comparison to its transcription profile

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

A two-dimensional quadrupole ion trap mass spectrometer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

The Orbitrap: a new mass spectrometer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Molecular dynamics of the Shewanella oneidensis response to chromate stress

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Dosage-dependent proteome response of Shewanella oneidensis MR-1 to acute chromate challenge

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Proteome analysis of Desulfovibrio desulfuricans G20 mutants using the accurate mass and time (AMT) tag approach

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Community structure and metabolism through reconstruction of microbial genomes from the environment

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Environmental genome shotgun sequencing of the Sargasso Sea

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Community proteomics of a natural microbial biofilm

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

A micropunch against plant viruses

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Metaproteomics provides functional insight into activated sludge wastewater treatment

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Metaproteomics: studying functional gene expression in microbial ecosystems

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Proteorhodopsin in the ubiquitous marine bacterium SAR11.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Shotgun metaproteomics of the human distal gut microbiota

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

A proteomic fingerprint of dissolved organic carbon and of soil particles.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Functional metaproteome analysis of protein extracts from contaminated soil and groundwater

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Proteogenomic mapping as a complementary method to perform genome annotation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Expressed peptide tags: an additional layer of data for genome annotation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Proteogenomics: needs and roles to be filled by proteomics in genome annotation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

What's driving false discovery rates?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Analysis and validation of proteomic data generated by tandem mass spectrometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Metaproteomic analysis of Chesapeake Bay microbial communities

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Metaproteomic analysis of a bacterial community response to cadmium exposure.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Evaluation of the extracellular proteins in full-scale activated sludges

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2080

Mass spectrometric methods for protein sequencing

31 March 2020

1 reference

12 December 2020

Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals

1 reference

12 December 2020

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

1 reference

12 December 2020

Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers

1 reference

12 December 2020

High resolution two-dimensional electrophoresis of proteins

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO2080

1 reference

Dimensions Publication ID

20 August 2017

1027746703

0 references

1 reference