A roadmap of clustering algorithms: finding a match for a biomedical application (Q37400407)

20 August 2017

A roadmap of clustering algorithms: finding a match for a biomedical application (English)

1 reference

20 August 2017

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4

Michael Schroeder

1 reference

20 August 2017

Bill Andreopoulos

1

1 reference

PubMed ID

19240124

20 August 2017

Aijun An

series ordinal

2

1 reference

PubMed ID

19240124

20 August 2017

Xiaogang Wang

series ordinal

3

1 reference

20 August 2017

24 February 2009

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Briefings in Bioinformatics

20 August 2017

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20 August 2017

10

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20 August 2017

297-314

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20 August 2017

3

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Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

20 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

How does gene expression clustering work?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Large scale hierarchical clustering of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Cancer outlier differential gene expression detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Clustering by common friends finds locally significant proteins mediating modules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Gene-Ontology-based clustering of gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Judging the quality of gene expression-based clustering methods using gene annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

THEA: ontology-driven analysis of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Clustering of gene expression data using a local shape-based similarity measure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Detecting clusters of different geometrical shapes in microarray gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Scoring clustering solutions by their biological relevance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Evaluation of gene-expression clustering via mutual information distance measure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Validating clustering for gene expression data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Comparisons and validation of statistical clustering techniques for microarray gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Tissue classification with gene expression profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Spectral biclustering of microarray data: coclustering genes and conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Functional analysis of the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

CLICK and EXPANDER: a system for clustering and visualizing gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Discovering statistically significant biclusters in gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Microarray data mining using landmark gene-guided clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

The mouse Gene Expression Database (GXD): 2007 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Global analysis of patterns of gene expression during Drosophila embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Genomic expression programs in the response of yeast cells to environmental changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

From patterns to pathways: gene expression data analysis comes of age.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Tumor classification by tissue microarray profiling: random forest clustering applied to renal cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Knowledge-based analysis of microarray gene expression data by using support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Molecular portraits of human breast tumours

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Systematic variation in gene expression patterns in human cancer cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

An integrated tool for microarray data clustering and cluster validity assessment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Clusterv: a tool for assessing the reliability of clusters discovered in DNA microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

The role of SPINK1 in ETS rearrangement-negative prostate cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Gene expression profiling of human prostate cancer stem cells reveals a pro-inflammatory phenotype and the importance of extracellular matrix interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

A network of protein-protein interactions in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Iterative cluster analysis of protein interaction data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

An ensemble framework for clustering protein-protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Clustering proteins from interaction networks for the prediction of cellular functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Co-clustering of biological networks and gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Evaluation of clustering algorithms for protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Graph-based clustering for finding distant relationships in a large set of protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

The advantage of functional prediction based on clustering of yeast genes and its correlation with non-sequence based classifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

A functional hierarchical organization of the protein sequence space

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Super paramagnetic clustering of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Multiple structural alignment and clustering of RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Clustered sequence representation for fast homology search

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Global mapping of the yeast genetic interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

A novel genetic system to detect protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Fuzzy C-means method for clustering microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Functional topology in a network of protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

An efficient algorithm for large-scale detection of protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Fuzzy J-Means and VNS methods for clustering genes from microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

BicAT: a biclustering analysis toolbox

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Efficient functional clustering of protein sequences using the Dirichlet process.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Model-based Bayesian clustering (MBBC).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Analysis of a Gibbs sampler method for model-based clustering of gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

MOST: detecting cancer differential gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Database indexing for production MegaBLAST searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN058

Biclustering algorithms for biological data analysis: a survey

21 January 2018

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1109/TCBB.2004.2

Identifiers

DOI

10.1093/BIB/BBN058

1 reference

journals/bib/AndreopoulosAWS09

20 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

19240124