Comparative analyses of prophage-like elements present in bifidobacterial genomes (Q37410146)

20 August 2017

Comparative analyses of prophage-like elements present in bifidobacterial genomes (English)

1 reference

20 August 2017

9

1 reference

20 August 2017

Francesca Bottacini

8

0 references

Francesca Turroni

Francesca Turroni

2

0 references

Sabrina Duranti

Sabrina Duranti

6

0 references

David A. Mills

David A Mills

12

0 references

Aldert Zomer

Aldert Zomer

5

0 references

Rodolphe Barrangou

Rodolphe Barrangou

10

0 references

Marco Ventura

Marco Ventura

1

0 references

Gipsi Lima-Mendez

Gipsi Lima-Mendez

3

0 references

Douwe van Sinderen

13

Douwe van Sinderen

1 reference

20 August 2017

Elena Foroni

4

1 reference

20 August 2017

Vanessa Giubellini

7

1 reference

20 August 2017

David A Sela

11

1 reference

20 August 2017

language of work or name

English

0 references

publication date

4 September 2009

1 reference

Applied and Environmental Microbiology

20 August 2017

1 reference

20 August 2017

75

1 reference

20 August 2017

21

1 reference

20 August 2017

6929-6936

1 reference

CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Comparative analyses of prophage-like elements present in two Lactococcus lactis strains

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Mobile genetic elements: the agents of open source evolution

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Phage as agents of lateral gene transfer

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Prophages and bacterial genomics: what have we learned so far?

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Integration and distribution of Lactobacillus johnsonii prophages

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

The Phage Proteomic Tree: a genome-based taxonomy for phage

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Lateral gene transfer and the nature of bacterial innovation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

The nucleotide sequence of Shiga toxin (Stx) 2e-encoding phage phiP27 is not related to other Stx phage genomes, but the modular genetic structure is conserved.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Comparative analysis of CRISPR loci in lactic acid bacteria genomes.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Reticulate representation of evolutionary and functional relationships between phage genomes

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2772436

Where are the pseudogenes in bacterial genomes?

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19734330

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The prophage sequences of Lactobacillus plantarum strain WCFS1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19734330

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Metabolic cooperation in oral microbial communities during growth on mucin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19734330

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.01112-09

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

19734330

1 reference