Folding, stability and shape of proteins in crowded environments: experimental and computational approaches (Q37427405)

20 August 2017

1 reference

1 December 2020

Folding, stability and shape of proteins in crowded environments: experimental and computational approaches (English)

1 reference

molecular dynamics simulation

20 August 2017

1 reference

PubMed publication ID

19333422

1 reference

19 September 2019

1 reference

19 November 2019

1 reference

20 November 2019

Flavodoxin, conserved site, protein family

1 reference

12 December 2019

1 reference

1 December 2020

Pernilla Wittung-Stafshede

series ordinal

2

1 reference

20 August 2017

Antonios Samiotakis

1

1 reference

20 August 2017

Margaret S Cheung

series ordinal

3

1 reference

20 August 2017

language of work or name

English

0 references

publication date

13 February 2009

1 reference

International Journal of Molecular Sciences

20 August 2017

1 February 2009

5 references

19 September 2019

19 November 2019

20 November 2019

12 December 2019

1 December 2020

6 references

20 August 2017

19 September 2019

19 November 2019

20 November 2019

12 December 2019

1 December 2020

10

1 reference

20 August 2017

2

1 reference

20 August 2017

572-588

1 reference

Creative Commons Attribution

20 August 2017

5 references

19 September 2019

19 November 2019

20 November 2019

12 December 2019

1 December 2020

0 references

Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Crowded, cell-like environment induces shape changes in aspherical protein

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Predicting protein folding rates from geometric contact and amino acid sequence

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Multiple routes lead to the native state in the energy landscape of the beta-trefoil family

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Molecular crowding enhances native state stability and refolding rates of globular proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: macromolecular crowding and protein stability revisited.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Theory of protein folding

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Loops, linkages, rings, catenanes, cages, and crowders: entropy-based strategies for stabilizing proteins.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

23 August 2017

Life in a crowded world

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

FlgM gains structure in living cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Effects of molecular crowding by saccharides on alpha-chymotrypsin dimerization

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Crystal structure of Lyme disease variable surface antigen VlsE of Borrelia burgdorferi

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Interpreting the effects of small uncharged solutes on protein-folding equilibria.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Macromolecular crowding perturbs protein refolding kinetics: implications for folding inside the cell

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Native topology determines force-induced unfolding pathways in globular proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Investigation of routes and funnels in protein folding by free energy functional methods

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Effect of a concentrated "inert" macromolecular cosolute on the stability of a globular protein with respect to denaturation by heat and by chaotropes: a statistical-thermodynamic model

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Effects of macromolecular crowding on protein folding and aggregation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Sensitive and specific serodiagnosis of Lyme disease by enzyme-linked immunosorbent assay with a peptide based on an immunodominant conserved region of Borrelia burgdorferi vlsE.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Contact order, transition state placement and the refolding rates of single domain proteins.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Theory of protein folding: the energy landscape perspective

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Spin glasses and the statistical mechanics of protein folding

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Thermodynamics and the structure of biological macromolecules. Rozhinkes mit mandeln

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Macromolecular crowding: biochemical, biophysical, and physiological consequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

THE INTERACTION BETWEEN POLYSACCHARIDES AND OTHER MACROMOLECULES. 4. THE OSMOTIC PRESSURE OF MIXTURES OF SERUM ALBUMIN AND HYALURONIC ACID

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

An approach to the study of phase separation in ternary aqueous systems

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Enzyme Reactions in Polymer Media

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Effect of mixed macromolecular crowding agents on protein folding

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Efficacy of macromolecular crowding in forcing proteins to fold

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Accelerated alpha-synuclein fibrillation in crowded milieu

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Biophysical compensation mechanisms buffering E. coli protein-nucleic acid interactions against changing environments

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660654

Excluded volume as a determinant of macromolecular structure and reactivity

2 September 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

Interaction between particles suspended in solutions of macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

The Largest Protein Observed To Fold by Two-State Kinetic Mechanism Does Not Obey Contact-Order Correlation

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

Effect of Inorganic Phosphate on FMN Binding and Loop Flexibility in Desulfovibrio desulfuricans Apo-flavodoxin

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

Thermal Unfolding of Apo and HoloDesulfovibrio desulfuricansFlavodoxin: Cofactor Stabilizes Folded and Intermediate States†

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

Macromolecular crowding increases structural content of folded proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS10020572

Antibody response to IR6, a conserved immunodominant region of the VlsE lipoprotein, wanes rapidly after antibiotic treatment of Borrelia burgdorferi infection in experimental animals and in humans

21 January 2018

1 reference

12 December 2020

Effect of dextran on protein stability and conformation attributed to macromolecular crowding

1 reference

12 December 2020

Molecular crowding effects of linear polymers in protein solutions

1 reference

12 December 2020

15N NMR spin relaxation dispersion study of the molecular crowding effects on protein folding under native conditions

1 reference

12 December 2020

Do proteins with similar folds have similar transition state structures? A diffuse transition state of the 169 residue apoflavodoxin

1 reference

12 December 2020

Mixed macromolecular crowding accelerates the refolding of rabbit muscle creatine kinase: implications for protein folding in physiological environments

1 reference

12 December 2020

Thermodynamic nonideality in macromolecular solutions. Evaluation of parameters for the prediction of covolume effects

1 reference

12 December 2020

Circular dichroism studies of distorted alpha-helices, twisted beta-sheets, and beta turns

1 reference

12 December 2020

Randomness of the process of protein folding

1 reference

12 December 2020

Structural characterisation of apoflavodoxin shows that the location of the stable nucleus differs among proteins with a flavodoxin-like topology

1 reference

12 December 2020

Identifiers

DOI

10.3390/IJMS10020572

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

19333422

1 reference