Deforming DNA: from physics to biology. (Q37506307)

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29 January 2020

review article

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title

Deforming DNA: from physics to biology (English)

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29 January 2020

2

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29 January 2020

Richard Lavery

series ordinal

3

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29 January 2020

author name string

Chantal Prévost

series ordinal

1

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29 January 2020

publication date

1 July 2009

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29 January 2020

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29 January 2020

volume

10

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29 January 2020

issue

9-10

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29 January 2020

page(s)

1399-1404

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A model for parallel triple helix formation by RecA: single-single association with a homologous duplex via the minor groove

29 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

Physical Studies of Nucleic Acid: Nucleic Acid: an Extensible Molecule?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Molecular Configuration in Sodium Thymonucleate

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Stress-induced structural transitions in DNA and proteins

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Ten years of tension: single-molecule DNA mechanics

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

https://api.crossref.org/works/10.1002%2FCPHC.200900253

1 reference

7 January 2021

Single molecule analysis of DNA replication

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Combing the genome for genomic instability.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Combing genomic DNA for structural and functional studies

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

DNA: an extensible molecule.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Stretching DNA with optical tweezers

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Structural transitions in DNA driven by external force and torque

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Modelling extreme stretching of DNA.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Molecular Dynamics Simulation of DNA Stretching Is Consistent with the Tension Observed for Extension and Strand Separation and Predicts a Novel Ladder Structure

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Force-induced melting of the DNA double helix 1. Thermodynamic analysis

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Force-induced melting of the DNA double helix. 2. Effect of solution conditions

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Salt dependence of the elasticity and overstretching transition of single DNA molecules

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

B-S transition in short oligonucleotides

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Molecular force balance measurements reveal that double-stranded DNA unbinds under force in rate-dependent pathways

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

DNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Thermodynamics of DNA interactions from single molecule stretching experiments.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Overstretching and force-driven strand separation of double-helix DNA

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

There and (slowly) back again: entropy-driven hysteresis in a model of DNA overstretching

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

The contribution of DNA single-stranded order to the thermodynamics of duplex formation

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Direct measurements of base stacking interactions in DNA by single-molecule atomic-force spectroscopy.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Stretching of homopolymeric RNA reveals single-stranded helices and base-stacking

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Weakly bound water molecules shorten single-stranded DNA

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Highly stretched single polymers: atomic-force-microscope experiments versus ab-initio theory

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Stretched and overwound DNA forms a Pauling-like structure with exposed bases

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

A Proposed Structure For The Nucleic Acids

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Structural transitions and elasticity from torque measurements on DNA.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

https://api.crossref.org/works/10.1002%2FCPHC.200900253

1 reference

7 January 2021

DNA overwinds when stretched

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

DNA replication meets genetic exchange: chromosomal damage and its repair by homologous recombination

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Elongation of duplex DNA by recA protein

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Does a stretched DNA structure dictate the helical geometry of RecA-like filaments?

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

The helicity of DNA in complexes with recA protein

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Geometry of the DNA strands within the RecA nucleofilament: role in homologous recombination

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Force-induced structural transitions in cross-linked DNA films

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Structure of RecA-DNA complexes studied by combination of linear dichroism and small-angle neutron scattering measurements on flow-oriented samples

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

An extended DNA structure through deoxyribose-base stacking induced by RecA protein

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Pf1 virus structure: helical coat protein and DNA with paraxial phosphates

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Structure models for DNA in filamentous viruses with phosphates near the center

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Sequence-specific recognition of double helical nucleic acids by proteins

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Intercalation, DNA kinking, and the control of transcription.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Minor groove-binding architectural proteins: structure, function, and DNA recognition.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Local DNA stretching mimics the distortion caused by the TATA box-binding protein

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Modeling DNA deformations induced by minor groove binding proteins

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Analyzing protein-DNA recognition mechanisms.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

https://api.crossref.org/works/10.1002%2FCPHC.200900253

1 reference

7 January 2021

The structure of DNA in the nucleosome core

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Spontaneous sharp bending of double-stranded DNA.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Cyclization of short DNA fragments and bending fluctuations of the double helix

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Kinking occurs during molecular dynamics simulations of small DNA minicircles.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Exact theory of kinkable elastic polymers.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Localized single-stranded bubble mechanism for cyclization of short double helix DNA

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Effects of kink and flexible hinge defects on mechanical responses of short double-stranded DNA molecules.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

VMD: visual molecular dynamics

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200900253

7 January 2021

Identifiers

DOI

10.1002/CPHC.200900253

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json

29 January 2020

1 reference