Automatic structural parcellation of mouse brain MRI using multi-atlas label fusion (Q37520781)

20 August 2017

Automatic structural parcellation of mouse brain MRI using multi-atlas label fusion (English)

1 reference

20 August 2017

1 reference

Nick Powell

4

0 references

Holly E Holmes

Holly Holmes

6

0 references

Ma Da

Da Ma

1

0 references

Jack A. Wells

Jack Wells

5

0 references

Mark Lythgoe

Mark F Lythgoe

10

0 references

Victor Tybulewicz

Victor Tybulewicz

8

0 references

Frances K Wiseman

Frances Wiseman

7

0 references

Elizabeth M. C. Fisher

9

Elizabeth Fisher

1 reference

20 August 2017

3

Marc Modat

1 reference

20 August 2017

Manuel J Cardoso

2

1 reference

20 August 2017

Sébastien Ourselin

11

1 reference

20 August 2017

language of work or name

English

0 references

publication date

27 January 2014

1 reference

20 August 2017

1 reference

20 August 2017

9

1 reference

20 August 2017

1

1 reference

20 August 2017

e86576

1 reference

Creative Commons Attribution 4.0 International

20 August 2017

start time

27 January 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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A comprehensive testing protocol for MRI neuroanatomical segmentation techniques: Evaluation of a novel lateral ventricle segmentation method

23 August 2017

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23 August 2017

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A symmetrical Waxholm canonical mouse brain for NeuroMaps

23 August 2017

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An MRI-based atlas and database of the developing mouse brain

23 August 2017

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Automated cross-sectional and longitudinal hippocampal volume measurement in mild cognitive impairment and Alzheimer's disease

23 August 2017

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LEAP: learning embeddings for atlas propagation

23 August 2017

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Combination strategies in multi-atlas image segmentation: application to brain MR data

23 August 2017

1 reference

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Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

23 August 2017

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In Vivo 3D Digital Atlas Database of the Adult C57BL/6J Mouse Brain by Magnetic Resonance Microscopy

23 August 2017

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Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy

23 August 2017

1 reference

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Morphometric analysis of the C57BL/6J mouse brain.

23 August 2017

1 reference

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The knockout mouse project

23 August 2017

1 reference

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Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation

23 August 2017

1 reference

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Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain

23 August 2017

1 reference

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Human and mouse gene structure: comparative analysis and application to exon prediction

23 August 2017

1 reference

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A nonparametric method for automatic correction of intensity nonuniformity in MRI data

23 August 2017

1 reference

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High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Nonrigid registration using free-form deformations: application to breast MR images

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Segmentation of the C57BL/6J mouse cerebellum in magnetic resonance images

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

A three-dimensional MRI atlas of the mouse brain with estimates of the average and variability

14 September 2017

1 reference

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14 September 2017

1 reference

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Hemisphere-specific optogenetic stimulation reveals left-right asymmetry of hippocampal plasticity

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Evaluation of Atlas based Mouse Brain Segmentation

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Cerebral asymmetries in 12-week-old C57Bl/6J mice measured by magnetic resonance imaging

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Automated segmentation of in vivo and ex vivo mouse brain magnetic resonance images

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Three-dimensional maximum probability atlas of the human brain, with particular reference to the temporal lobe

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Mapping registration sensitivity in MR mouse brain images.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Operationalizing protocol differences for EADC-ADNI manual hippocampal segmentation

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Atlas-based automatic mouse brain image segmentation revisited: model complexity vs. image registration

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Segmentation of the mouse hippocampal formation in magnetic resonance images.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE)

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

A registration-based propagation framework for automatic whole heart segmentation of cardiac MRI.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Improving intersubject image registration using tissue-class information benefits robustness and accuracy of multi-atlas based anatomical segmentation

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Fast free-form deformation using graphics processing units.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Cortical thickness measured from MRI in the YAC128 mouse model of Huntington's disease

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

2 September 2018

Shape-based averaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Inter-rater reliability of manual segmentation of the superior, inferior and middle frontal gyri

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Automatic anatomical brain MRI segmentation combining label propagation and decision fusion

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Performance-based classifier combination in atlas-based image segmentation using expectation-maximization parameter estimation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

High-resolution 3D MRI of mouse brain reveals small cerebral structures in vivo.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Three-dimensional mapping of cortical thickness using Laplace's equation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Automatic measurement of changes in brain volume on consecutive 3D MR images by segmentation propagation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

Classifier selection strategies for label fusion using large atlas databases

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3903537

In vivo multiple-mouse MRI at 7 Tesla

5 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24475148

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0086576

1 reference

20 August 2017

0 references

1 reference

20 August 2017

PubMed publication ID

24475148

1 reference