A yeast arginine specific tRNA is a remnant aspartate acceptor. (Q37563974)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15452274%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

A yeast arginine specific tRNA is a remnant aspartate acceptor (English)

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3 January 2020

3

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3 January 2020

author name string

Aurélie Fender

1

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3 January 2020

Renaud Geslain

2

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3 January 2020

Richard Giegé

4

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3 January 2020

Marie Sissler

5

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3 January 2020

Catherine Florentz

6

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3 January 2020

language of work or name

English

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publication date

27 September 2004

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3 January 2020

published in

Nucleic Acids Research

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3 January 2020

volume

32

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3 January 2020

issue

17

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3 January 2020

page(s)

5076-5086

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Genome evolution in yeasts

3 January 2020

cites work

1 reference

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Driving change: the evolution of alternative genetic codes.

23 August 2017

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Trans-editing of mischarged tRNAs

23 August 2017

1 reference

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A yeast knockout strain to discriminate between active and inactive tRNA molecules

23 August 2017

1 reference

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Aminoacyl-tRNA synthetases: potential markers of genetic code development

23 August 2017

1 reference

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Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation

23 August 2017

1 reference

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The renaissance of aminoacyl-tRNA synthesis

23 August 2017

1 reference

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The evolutionary fate and consequences of duplicate genes

23 August 2017

1 reference

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A domain in the N-terminal extension of class IIb eukaryotic aminoacyl-tRNA synthetases is important for tRNA binding

23 August 2017

1 reference

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Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

23 August 2017

1 reference

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Thermus thermophilus: a link in evolution of the tRNA-dependent amino acid amidation pathways

23 August 2017

1 reference

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23 August 2017

The universal ancestor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Mirror image alternative interaction patterns of the same tRNA with either class I arginyl-tRNA synthetase or class II aspartyl-tRNA synthetase

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Arginine aminoacylation identity is context-dependent and ensured by alternate recognition sets in the anticodon loop of accepting tRNA transcripts

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

23 August 2017

1 reference

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Additive, cooperative and anti-cooperative effects between identity nucleotides of a tRNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

The active site of yeast aspartyl-tRNA synthetase: structural and functional aspects of the aminoacylation reaction

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Efficient aminoacylation of resected RNA helices by class II aspartyl-tRNA synthetase dependent on a single nucleotide

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 A.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Factors determining the specificity of the tRNA aminoacylation reaction. Non-absolute specificity of tRNA-aminoacyl-tRNA synthetase recognition and particular importance of the maximal velocity

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Universal rules and idiosyncratic features in tRNA identity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Reaction of aminoacyl-tRNA synthetases with heterologous tRNA's.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

The role of the anticodon in recognition of tRNA by aminoacyl-tRNA synthetases

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Ribozyme processed tRNA transcripts with unfriendly internal promoter for T7 RNA polymerase: production and activity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Interpretation of Incomplete Reactions in tRNA Aminoacylation. Aminoacylation of Yeast tRNAValII with Yeast Valyl-tRNA Synthetase

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Anticodon switching changes the identity of methionine and valine transfer RNAs.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Synthetase competition and tRNA context determine the in vivo identify of tRNA discriminator mutants

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Functional idiosyncrasies of tRNA isoacceptors in cognate and noncognate aminoacylation systems

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Yeast tRNA(Asp) charging accuracy is threatened by the N-terminal extension of aspartyl-tRNA synthetase

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Did tRNA synthetase classes arise on opposite strands of the same gene?

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Evolution of a transfer RNA gene through a point mutation in the anticodon

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Identity of prokaryotic and eukaryotic tRNA(Asp) for aminoacylation by aspartyl-tRNA synthetase from Thermus thermophilus

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Identity switches between tRNAs aminoacylated by class I glutaminyl- and class II aspartyl-tRNA synthetases.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Identity elements for specific aminoacylation of yeast tRNA(Asp) by cognate aspartyl-tRNA synthetase

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

1 September 2018

The second genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521656

Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archaeal root of life

3 December 2018

1 reference

12 December 2020

Domain-specific recruitment of amide amino acids for protein synthesis

1 reference

12 December 2020

A simple structural feature is a major determinant of the identity of a transfer RNA

1 reference

12 December 2020

Relaxation of a transfer RNA specificity by removal of modified nucleotides

1 reference

12 December 2020

Competition of aminoacyl-tRNA synthetases for tRNA ensures the accuracy of aminoacylation

1 reference

12 December 2020

Yeast tRNAAsp recognition by its cognate class II aminoacyl-tRNA synthetase

1 reference

12 December 2020

A single methyl group prevents the mischarging of a tRNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKH843

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15452274%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15452274%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

PubMed publication ID

15452274

1 reference