Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays. (Q37564595)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15456895%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15456895%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

0 references

1 reference

1

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3 January 2020

Christoph W. Sensen

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15456895%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

author name string

Paul M K Gordon

series ordinal

1

1 reference

21 August 2017

language of work or name

English

0 references

publication date

29 September 2004

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3 January 2020

published in

Nucleic Acids Research

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3 January 2020

volume

32

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3 January 2020

issue

17

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3 January 2020

page(s)

e133

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Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays

3 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Mfold web server for nucleic acid folding and hybridization prediction

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Transcription profiling of Candida albicans cells undergoing the yeast-to-hyphal transition

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

The complete genome of the crenarchaeon Sulfolobus solfataricus P2

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Primer3 on the WWW for general users and for biologist programmers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Profile hidden Markov models

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

The Staden sequence analysis package

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Identification of common molecular subsequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Profile analysis: detection of distantly related proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Predicting DNA duplex stability from the base sequence

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Improved free-energy parameters for predictions of RNA duplex stability

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Optimization of the annealing temperature for DNA amplification in vitro

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Hybridization of synthetic oligodeoxyribonucleotides to ΦX174 DNA: the effect of single base pair mismatch

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Surface electrostatic effects in oligonucleotide microarrays: control and optimization of binding thermodynamics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Stability of ribonucleic acid double-stranded helices

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Thermodynamic parameters for DNA sequences with dangling ends

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Thermodynamics of internal C.T mismatches in DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Computer programs for PCR primer design and analysis.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Microarray synthesis through multiple-use PCR primer design.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Selection of optimal DNA oligos for gene expression arrays

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Efficient primer design algorithms

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521677

Oligodb--interactive design of oligo DNA for transcription profiling of human genes

1 September 2018

1 reference

12 December 2020

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

12 December 2020

OligoArray: genome-scale oligonucleotide design for microarrays

1 reference

12 December 2020

Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays

1 reference

12 December 2020

Microarray probe selection strategies

1 reference

12 December 2020

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

1 reference

12 December 2020

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA

1 reference

12 December 2020

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GNH127

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15456895%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15456895%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

PubMed publication ID

15456895

1 reference