An unusual topological structure of the HIV-1 Rev response element (Q37570088)

21 August 2017

An unusual topological structure of the HIV-1 Rev response element (English)

1 reference

21 August 2017

0 references

3

1 reference

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7 June 2020

Jørgen Kjems

11

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7 June 2020

Randall E Winans

14

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7 June 2020

Paul T. Wingfield

17

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7 June 2020

R. Andrew Byrd

18

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7 June 2020

author name string

Xianyang Fang

1

1 reference

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7 June 2020

Jinbu Wang

2

1 reference

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7 June 2020

Michelle Mitchell

4

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7 June 2020

Xiaobing Zuo

5

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7 June 2020

Yi Wang

6

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7 June 2020

Ping Yu

7

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7 June 2020

Yu Liu

8

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7 June 2020

Jason W Rausch

9

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7 June 2020

Marzena A Dyba

10

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7 June 2020

Soenke Seifert

13

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7 June 2020

Norman R Watts

15

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7 June 2020

Stephen J Stahl

16

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7 June 2020

Stuart F J Le Grice

19

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7 June 2020

Alan Rein

20

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7 June 2020

Yun-Xing Wang

21

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7 June 2020

Charles D Schwieters

12

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7 June 2020

language of work or name

English

0 references

publication date

24 October 2013

1 reference

21 August 2017

1 reference

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7 June 2020

volume

155

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7 June 2020

issue

3

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7 June 2020

page(s)

594-605

1 reference

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The HIV-2 Rev-response element: determining secondary structure and defining folding intermediates

7 June 2020

cites work

1 reference

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Accurate assessment of mass, models and resolution by small-angle scattering

23 August 2017

1 reference

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Formation of trans-activation competent HIV-1 Rev:RRE complexes requires the recruitment of multiple protein activation domains

23 August 2017

1 reference

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Reliable structural interpretation of small-angle scattering data from bio-molecules in solution--the importance of quality control and a standard reporting framework

23 August 2017

1 reference

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A long-awaited structure is rev-ealed

23 August 2017

1 reference

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Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law.

23 August 2017

1 reference

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Topological constraints: using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation

23 August 2017

1 reference

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Emerging structural themes in large RNA molecules

23 August 2017

1 reference

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Comparative analysis of RNA/protein dynamics for the arginine-rich-binding motif and zinc-finger-binding motif proteins encoded by HIV-1.

23 August 2017

1 reference

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Structural basis for cooperative RNA binding and export complex assembly by HIV Rev

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes

23 August 2017

1 reference

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On the significance of an RNA tertiary structure prediction

23 August 2017

1 reference

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Implications of the HIV-1 Rev dimer structure at 3.2 A resolution for multimeric binding to the Rev response element

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

A method for helical RNA global structure determination in solution using small-angle x-ray scattering and NMR measurements

23 August 2017

1 reference

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Architecture and secondary structure of an entire HIV-1 RNA genome

23 August 2017

1 reference

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Thermodynamic profiling of HIV RREIIB RNA-zinc finger interactions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Structure of the HIV-1 Rev response element alone and in complex with regulator of virion (Rev) studied by atomic force microscopy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

HIV-1 Rev protein assembles on viral RNA one molecule at a time

23 August 2017

1 reference

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A solution to limited genomic capacity: using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA

23 August 2017

1 reference

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Resistance to RevM10 inhibition reflects a conformational switch in the HIV-1 Rev response element

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Heterocyclic compounds that inhibit Rev-RRE function and human immunodeficiency virus type 1 replication

23 August 2017

1 reference

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Structural principles from large RNAs

23 August 2017

1 reference

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

23 August 2017

1 reference

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A physical picture of atomic motions within the Dickerson DNA dodecamer in solution derived from joint ensemble refinement against NMR and large-angle X-ray scattering data

23 August 2017

1 reference

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The building blocks and motifs of RNA architecture

23 August 2017

1 reference

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X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation

23 August 2017

1 reference

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Arginine-rich motifs present multiple interfaces for specific binding by RNA.

23 August 2017

1 reference

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Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

23 August 2017

1 reference

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Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution

23 August 2017

1 reference

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Improving the accuracy of NMR structures of RNA by means of conformational database potentials of mean force as assessed by complete dipolar coupling cross-validation

23 August 2017

1 reference

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Small molecule modulators of HIV Rev/Rev response element interaction identified by random screening

23 August 2017

1 reference

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Structure-based design of an RNA-binding zinc finger

23 August 2017

1 reference

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Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

23 August 2017

1 reference

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The effect of viral regulatory protein expression on gene delivery by human immunodeficiency virus type 1 vectors produced in stable packaging cell lines.

23 August 2017

1 reference

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Anti-peptide aptamers recognize amino acid sequence and bind a protein epitope

23 August 2017

1 reference

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Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex

23 August 2017

1 reference

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A molecular rheostat. Co-operative rev binding to stem I of the rev-response element modulates human immunodeficiency virus type-1 late gene expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

HIV-1 structural gene expression requires binding of the Rev trans-activator to its RNA target sequence

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Characterization of HIV-1 REV protein: binding stoichiometry and minimal RNA substrate

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

HIV-1 structural gene expression requires the binding of multiple Rev monomers to the viral RRE: implications for HIV-1 latency

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Structural analysis of the interaction between the human immunodeficiency virus Rev protein and the Rev response element

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich "bubble" located within the rev-responsive region of viral mRNAs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type 1 Rev protein

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Oligomerization and RNA binding domains of the type 1 human immunodeficiency virus Rev protein: a dual function for an arginine-rich binding motif

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

HIV-1 regulator of virion expression (Rev) protein binds to an RNA stem-loop structure located within the Rev response element region

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Structural analysis of intrinsically disordered proteins by small-angle X-ray scattering

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

The complete VS ribozyme in solution studied by small-angle X-ray scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Specific binding of HIV-1 recombinant Rev protein to the Rev-responsive element in vitro

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Analysis of four-way junctions in RNA structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Biochemical characterization of binding of multiple HIV-1 Rev monomeric proteins to the Rev responsive element.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

A simple motif for protein recognition in DNA secondary structures

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Structure of free Thermus flavus 5 S rRNA at 1.3 nm resolution from synchrotron X-ray solution scattering.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

Improvements and Extensions in the Conformational Database Potential for the Refinement of NMR and X-ray Structures of Proteins and Nucleic Acids

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3918456

10.1016/J.CELL.2013.10.008

3 December 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24243017%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24243017%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

24243017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24243017%20AND%20SRC:MED&resulttype=core&format=json