Hidden complexity of free energy surfaces for peptide (protein) folding (Q37571434)

21 August 2017

Hidden complexity of free energy surfaces for peptide (protein) folding (English)

1 reference

21 August 2017

0 references

2

Martin Karplus

1 reference

21 August 2017

Sergei V Krivov

1

1 reference

PMCID

522040

21 August 2017

language of work or name

English

0 references

publication date

4 October 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

21 August 2017

1 reference

21 August 2017

101

1 reference

21 August 2017

41

1 reference

21 August 2017

14766-14770

1 reference

Theory of protein folding

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

How enzymes work: analysis by modern rate theory and computer simulations

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Transition-path sampling of β-hairpin folding

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Free energy landscape of protein folding in water: Explicit vs. implicit solvent

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Analysis of the distributed computing approach applied to the folding of a small beta peptide

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

On the simulation of protein folding by short time scale molecular dynamics and distributed computing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Why are proteins so robust to site mutations?

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

The free energy landscape for beta hairpin folding in explicit water

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Solvent effects on the energy landscapes and folding kinetics of polyalanine

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Understanding beta-hairpin formation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Effective energy function for proteins in solution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Folding dynamics and mechanism of beta-hairpin formation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

From Levinthal to pathways to funnels

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Navigating the folding routes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Enthalpic contribution to protein stability: insights from atom-based calculations and statistical mechanics.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Folding of the GB1 hairpin peptide from discrete path sampling.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Complex folding pathways in a simple beta-hairpin

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Peptide models provide evidence for significant structure in the denatured state of a rapidly folding protein: the villin headpiece subdomain

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522040

Maximal flow through a network

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0406234101

Thermodynamics of a beta-hairpin structure: evidence for cooperative formation of folding nucleus

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15466711

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

First-principles calculation of the folding free energy of a three-helix bundle protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15466711

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Simulation of activation free energies in molecular systems

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1073/PNAS.0406234101

Archetypal energy landscapes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1073/PNAS.0406234101

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1073/PNAS.0406234101

Identifiers

DOI

10.1073/PNAS.0406234101

1 reference

21 August 2017

0 references

1 reference

21 August 2017

1 reference

PMCID

522040