Extracellular DNA metabolism in Haloferax volcanii (Q37594316)

21 August 2017

Extracellular DNA metabolism in Haloferax volcanii (English)

1 reference

21 August 2017

Haloferax volcanii

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Scott Chimileski

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Kunal Dolas

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Adit Naor

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

R Thane Papke

5

1 reference

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9 June 2020

publication date

20 February 2014

1 reference

Frontiers in Microbiology

21 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

57

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

Self-organization of bacterial biofilms is facilitated by extracellular DNA.

9 June 2020

cites work

1 reference

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New and continuing developments at PROSITE.

23 August 2017

1 reference

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Overview of the genetic tools in the Archaea

23 August 2017

1 reference

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Diversity and subcellular distribution of archaeal secreted proteins

23 August 2017

1 reference

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Living with salt: metabolic and phylogenetic diversity of archaea inhabiting saline ecosystems.

23 August 2017

1 reference

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Nuclease modulates biofilm formation in community-associated methicillin-resistant Staphylococcus aureus

23 August 2017

1 reference

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Extracellular nucleases and extracellular DNA play important roles in Vibrio cholerae biofilm formation.

23 August 2017

1 reference

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Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

23 August 2017

1 reference

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Towards a systems approach in the genetic analysis of archaea: Accelerating mutant construction and phenotypic analysis in Haloferax volcanii

23 August 2017

1 reference

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Pseudomonas aeruginosa produces an extracellular deoxyribonuclease that is required for utilization of DNA as a nutrient source

23 August 2017

1 reference

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The complete genome sequence of Haloferax volcanii DS2, a model archaeon

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Role of extracellular DNA during biofilm formation by Listeria monocytogenes

23 August 2017

1 reference

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MicrobesOnline: an integrated portal for comparative and functional genomics

23 August 2017

1 reference

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SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

23 August 2017

1 reference

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Shuffling genes around in hot environments: the unique DNA transporter of Thermus thermophilus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

The extracellular nuclease Dns and its role in natural transformation of Vibrio cholerae

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

On the origin of prokaryotic "species": the taxonomy of halophilic Archaea

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Haloarchaeal communities in the crystallizers of two adriatic solar salterns

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Diversity and metabolism of marine bacteria cultivated on dissolved DNA.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Evolution of competence and DNA uptake specificity in the Pasteurellaceae.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

From genomes to function: haloarchaea as model organisms

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

The ins and outs of DNA transfer in bacteria.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Archaeal genetics - the third way.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Transmission of Creutzfeldt-Jakob disease from man to the guinea pig

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Bacillus subtilis YhcR, a high-molecular-weight, nonspecific endonuclease with a unique domain structure

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

DNA transport into Bacillus subtilis requires proton motive force to generate large molecular forces

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

DNA uptake during bacterial transformation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

DNA as a Nutrient: Novel Role for Bacterial Competence Gene Homologs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Purification and characterization of a Bacillus subtilis 168 nuclease, YokF, involved in chromosomal DNA degradation and cell death caused by thermal shock treatments

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Archaeal Biodiversity in Crystallizer Ponds from a Solar Saltern: Culture versus PCR.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

A genomic perspective on protein families

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Characterization of a nuclease produced by Staphylococcus aureus

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Characterization of pHV2 from Halobacterium volcanii and its use in demonstrating transformation of an archaebacterium

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Basic local alignment search tool

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Extracellular DNA shields against aminoglycosides in Pseudomonas aeruginosa biofilms

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Degradation and turnover of extracellular DNA in marine sediments: ecological and methodological considerations.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Roles of two Shewanella oneidensis MR-1 extracellular endonucleases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Phage-induced lysis enhances biofilm formation in Shewanella oneidensis MR-1.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Mycoplasma hyopneumoniae mhp379 is a Ca2+-dependent, sugar-nonspecific exonuclease exposed on the cell surface

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Biogenesis of a putative channel protein, ComEC, required for DNA uptake: membrane topology, oligomerization and formation of disulphide bonds

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

A novel determinant (comA) essential for natural transformation competence in Neisseria gonorrhoeae and the effect of a comA defect on pilin variation.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt requirement

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Evolutionary advantages of polyploidy in halophilic archaea

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Extracellular DNA is abundant and important for microcolony strength in mixed microbial biofilms.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Limitation of oxygenic photosynthesis and oxygen consumption by phosphate and organic nitrogen in a hypersaline microbial mat: a microsensor study

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Extracellular DNA in single- and multiple-species unsaturated biofilms

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Viruses, prokaryotes and DNA in the sediments of a deep-hypersaline anoxic basin (DHAB) of the Mediterranean Sea.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

The search for traces of life: the protective effect of salt on biological macromolecules

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Primary structure and biological features of a thermostable nuclease isolated from Staphylococcus hyicus

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Extracellular DNA plays a key role in deep-sea ecosystem functioning

1 September 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

2 October 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3929857

Biofilm formation by haloarchaea

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24600440

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

NucA is required for DNA cleavage during transformation of Bacillus subtilis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24600440

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Frequent recombination in a saltern population of Halorubrum

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24600440

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FMICB.2014.00057

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

24600440

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24600440%20AND%20SRC:MED&resulttype=core&format=json