Selectome update: quality control and computational improvements to a database of positive selection (Q37661803)

21 August 2017

Selectome update: quality control and computational improvements to a database of positive selection (English)

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21 August 2017

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7

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21 August 2017

Marc Robinson-Rechavi

11

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21 August 2017

Walid H Gharib

3

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Arnold Kuzniar

Arnold Kuzniar

5

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Sébastien Moretti

Sébastien Moretti

1

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Heinz Stockinger

Heinz Stockinger

10

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Nicolas Salamin

Nicolas Salamin

9

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author name string

Balazs Laurenczy

2

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21 August 2017

Briséïs Castella

4

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21 August 2017

Hannes Schabauer

6

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21 August 2017

Mario Valle

8

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21 August 2017

language of work or name

English

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publication date

12 November 2013

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21 August 2017

Nucleic Acids Research

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21 August 2017

42

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21 August 2017

Database issue

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21 August 2017

D917-21

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Creative Commons Attribution 3.0 Unported

21 August 2017

start time

4 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

An alignment confidence score capturing robustness to guide tree uncertainty

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Evidence for an episodic model of protein sequence evolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Selectome: a database of positive selection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

MaxAlign: maximizing usable data in an alignment

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

PAML 4: phylogenetic analysis by maximum likelihood

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

M-Coffee: combining multiple sequence alignment methods with T-Coffee

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

The distributed annotation system

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

The effects of alignment error and alignment filtering on the sitewise detection of positive selection.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Improving the performance of positive selection inference by filtering unreliable alignment regions.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

Evolutionary models accounting for layers of selection in protein-coding genes and their impact on the inference of positive selection

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3964977

The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection

1 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24225318

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT1065

1 reference

journals/nar/MorettiLGCKSSVSSR14

21 August 2017

1 reference

DBLP Dataset 2021-01-02

release_qxwzdhmty5cnfai5th2ngh5ghi

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/qxwzdhmty5cnfai5th2ngh5ghi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

21 August 2017

1 reference