Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales (Q37678749)

21 August 2017

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales (English)

1 reference

21 August 2017

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Craig T Michell

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Christian R. Voolstra

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

5

David G Bourne

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Rita Rachmawati

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Liping Xun

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Amy Apprill

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

publication date

8 July 2016

1 reference

21 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

186-200

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International

10 June 2020

copyright license

start time

8 July 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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23 August 2017

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23 August 2017

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23 August 2017

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

23 August 2017

1 reference

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Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

23 August 2017

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Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

23 August 2017

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Disturbance to conserved bacterial communities in the cold-water gorgonian coral Eunicella verrucosa

23 August 2017

1 reference

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Genomics and host specialization of honey bee and bumble bee gut symbionts

23 August 2017

1 reference

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Assessing Symbiodinium diversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region

23 August 2017

1 reference

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Endozoicomonas atrinae sp. nov., isolated from the intestine of a comb pen shell Atrina pectinata

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building corals

23 August 2017

1 reference

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Waste not, want not: why rarefying microbiome data is inadmissible

23 August 2017

1 reference

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The gut of geographically disparate Ciona intestinalis harbors a core microbiota.

23 August 2017

1 reference

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Amplicon pyrosequencing reveals spatial and temporal consistency in diazotroph assemblages of the Acropora millepora microbiome

23 August 2017

1 reference

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Bacterial profiling of White Plague Disease across corals and oceans indicates a conserved and distinct disease microbiome

23 August 2017

1 reference

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MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Bacterial profiling of White Plague Disease in a comparative coral species framework

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Bacterial communities of the gorgonian octocoral Pseudopterogorgia elisabethae

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Ecological Inferences from a deep screening of the Complex Bacterial Consortia associated with the coral, Porites astreoides

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

16SrDNA Pyrosequencing of the Mediterranean Gorgonian Paramuricea clavata Reveals a Link among Alterations in Bacterial Holobiont Members, Anthropogenic Influence and Disease Outbreaks

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Description of Endozoicomonas euniceicola sp. nov. and Endozoicomonas gorgoniicola sp. nov., bacteria isolated from the octocorals Eunicea fusca and Plexaura sp., and an emended description of the genus Endozoicomonas

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

The microbiome of the Red Sea coral Stylophora pistillata is dominated by tissue-associated Endozoicomonas bacteria

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

In-situ effects of eutrophication and overfishing on physiology and bacterial diversity of the red sea coral Acropora hemprichii

23 August 2017

1 reference

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phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

DNA barcoding reveals the coral "laboratory-rat", Stylophora pistillata encompasses multiple identities

23 August 2017

1 reference

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23 August 2017

1 reference

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Transient shifts in bacterial communities associated with the temperate gorgonian Paramuricea clavata in the Northwestern Mediterranean Sea.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Free-living bacterial communities associated with tubeworm (Ridgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent habitats at the Main Endeavour Field, Juan de Fuca Ridge

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

23 August 2017

1 reference

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The 27-year decline of coral cover on the Great Barrier Reef and its causes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Specificity of associations between bacteria and the coral Pocillopora meandrina during early development

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Intergenerational transfer of specific bacteria in corals and possible implications for offspring fitness

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Bacterial associates of two Caribbean coral species reveal species-specific distribution and geographic variability

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Beyond the Venn diagram: the hunt for a core microbiome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

UCHIME improves sensitivity and speed of chimera detection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Bacterial acquisition in juveniles of several broadcast spawning coral species

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Coral-associated bacteria and their role in the biogeochemical cycling of sulfur

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

The onset of microbial associations in the coral Pocillopora meandrina

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Changes in coral-associated microbial communities during a bleaching event

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Bacterial endosymbiont of the slender pigeon louse, Columbicola columbae, allied to endosymbionts of grain weevils and tsetse flies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

The coral probiotic hypothesis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Microbial diversity in the deep sea and the underexplored "rare biosphere"

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Quorum sensing: cell-to-cell communication in bacteria

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

MUSCLE: multiple sequence alignment with high accuracy and high throughput

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

ARB: a software environment for sequence data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Multispecies Microbial Mutualisms on Coral Reefs: The Host as a Habitat

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Natural volcanic CO2 seeps reveal future trajectories for host-microbial associations in corals and sponges.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Onset and establishment of diazotrophs and other bacterial associates in the early life history stages of the coral Acropora millepora

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Whole-genome sequences of three symbiotic endozoicomonas strains

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

A novel agent (Endozoicomonas elysicola) responsible for epitheliocystis in cobia Rachycentrum canadum larvae

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Culture-dependent and culture-independent analyses reveal no prokaryotic community shifts or recovery of Serratia marcescens in Acropora palmata with white pox disease

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Discovery of symbiotic nitrogen-fixing cyanobacteria in corals

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5335547

Energetics, competency, and long-distance dispersal of planula larvae of the coral Pocillopora damicornis

1 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

Diversity of bacteria associated with the Caribbean coral Montastraea franksi

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

21 January 2018

Coral-associated Archaea

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

Bacterial populations and adaptations in the mucus layers on living corals1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

Absence of genetic differentiation in the coral Pocillopora verrucosa along environmental gradients of the Saudi Arabian Red Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

Widespread Oceanospirillaceae Bacteria inPoritesspp

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

Intracellular Oceanospirillales bacteria inhabit gills of Acesta bivalves

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27392086

12 December 2020

inferred from PubMed ID database lookup

Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27392086

12 December 2020

inferred from PubMed ID database lookup

Bacteria of the genus Endozoicomonas dominate the microbiome of the Mediterranean gorgonian coral Eunicella cavolini

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

7 January 2021

inferred from DOI database lookup

Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora, Scleractinia)

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

7 January 2021

inferred from DOI database lookup

Diversity and distribution of coral-associated bacteria

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.95

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/ISMEJ.2016.95

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

10 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27392086%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

PubMed publication ID

27392086

1 reference