Practical application of bioinformatics by the multidisciplinary VIZIER consortium (Q37691838)

22 August 2017

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Practical application of bioinformatics by the multidisciplinary VIZIER consortium (English)

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22 August 2017

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22 August 2017

Igor A Sidorov

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Alexander E. Gorbalenya

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Alexander E Gorbalenya

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Bruno Canard

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Bruno Canard

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22 August 2017

Philippe Lieutaud

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22 August 2017

Mark R Harris

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22 August 2017

Bruno Coutard

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22 August 2017

Alexander A Kravchenko

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22 August 2017

Dmitry V Samborskiy

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22 August 2017

Andrey M Leontovich

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22 August 2017

T Alwyn Jones

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22 August 2017

11 February 2010

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22 August 2017

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22 August 2017

87

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2

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22 August 2017

95-110

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Homology-extended sequence alignment

22 August 2017

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12 December 2020

Model building and refinement practice

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12 December 2020

Trans-dominant inhibition of RNA viral replication can slow growth of drug-resistant viruses

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12 December 2020

The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem

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12 December 2020

N-terminal domains of putative helicases of flavi- and pestiviruses may be serine proteases

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12 December 2020

Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses

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12 December 2020

Detecting folding motifs and similarities in protein structures

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12 December 2020

The CCP4 suite: programs for protein crystallography

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12 December 2020

FoldUnfold: web server for the prediction of disordered regions in protein chain.

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12 December 2020

Structure of the methyltransferase domain from the Modoc virus, a flavivirus with no known vector

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12 December 2020

The 2A proteins of three diverse picornaviruses are related to each other and to the H-rev107 family of proteins involved in the control of cell proliferation

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12 December 2020

AstexViewer: a visualisation aid for structure-based drug design

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12 December 2020

Big nidovirus genome. When count and order of domains matter.

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12 December 2020

Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage

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12 December 2020

The RNA virus database

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12 December 2020

Efficient rebuilding of protein structures.

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12 December 2020

Xtrack - a web-based crystallographic notebook

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12 December 2020

Viral cysteine proteinases

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12 December 2020

Refinement of macromolecular structures by the maximum-likelihood method

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12 December 2020

Computer-assisted identification of a putative methyltransferase domain in NS5 protein of flaviviruses and lambda 2 protein of reovirus

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12 December 2020

SnapDRAGON: a method to delineate protein structural domains from sequence data

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12 December 2020

Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses

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12 December 2020

MeDor: a metaserver for predicting protein disorder

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12 December 2020

T-Coffee: A novel method for fast and accurate multiple sequence alignment

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12 December 2020

Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases.

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12 December 2020

Primary structure, gene organization and polypeptide expression of poliovirus RNA.

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12 December 2020

Structure of the RNA-dependent RNA polymerase of poliovirus

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12 December 2020

MEROPS: the peptidase database

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12 December 2020

The population genetics and evolutionary epidemiology of RNA viruses

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12 December 2020

Severe acute respiratory syndrome coronavirus papain-like protease: structure of a viral deubiquitinating enzyme

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12 December 2020

Production of "authentic" poliovirus RNA-dependent RNA polymerase (3D(pol)) by ubiquitin-protease-mediated cleavage in Escherichia coli.

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12 December 2020

The Uppsala Electron-Density Server

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12 December 2020

SNAD: Sequence Name Annotation-based Designer

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12 December 2020

E-MSD: an integrated data resource for bioinformatics.

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12 December 2020

Coronavirus 3CLpro proteinase cleavage sites: possible relevance to SARS virus pathology

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12 December 2020

CDD: specific functional annotation with the Conserved Domain Database

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12 December 2020

Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily

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12 December 2020

Coronavirus genome: prediction of putative functional domains in the non-structural polyprotein by comparative amino acid sequence analysis.

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12 December 2020

Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions

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12 December 2020

PPRODO: Prediction of protein domain boundaries using neural networks

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12 December 2020

Computer-assisted protein domain boundary prediction using the DomPred server

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12 December 2020

ChemDB: a public database of small molecules and related chemoinformatics resources

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12 December 2020

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ

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12 December 2020

Improved methods for building protein models in electron density maps and the location of errors in these models

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12 December 2020

Viral RNA-polymerases -- a predicted 2'-O-ribose methyltransferase domain shared by all Mononegavirales

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12 December 2020

Nidovirales: evolving the largest RNA virus genome

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12 December 2020

Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networks

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12 December 2020

The autocatalytic release of a putative RNA virus transcription factor from its polyprotein precursor involves two paralogous papain-like proteases that cleave the same peptide bond.

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12 December 2020

VaZyMolO: a tool to define and classify modularity in viral proteins

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12 December 2020

The VIZIER project: preparedness against pathogenic RNA viruses

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12 December 2020

Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3.

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12 December 2020

The 20 years of PROSITE

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12 December 2020

Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT

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12 December 2020

Armadillo: domain boundary prediction by amino acid composition.

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12 December 2020

The Pfam protein families database

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12 December 2020

Phi/psi-chology: Ramachandran revisited

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12 December 2020

Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. A distinct protein superfamily with a common structural fold

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12 December 2020

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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12 December 2020

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12 December 2020

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

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12 December 2020

Prediction of number and position of domain boundaries in multi-domain proteins by use of amino acid sequence alone.

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12 December 2020

DomCut: prediction of inter-domain linker regions in amino acid sequences.

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12 December 2020

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

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12 December 2020

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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12 December 2020

RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins

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12 December 2020

SuperLigands - a database of ligand structures derived from the Protein Data Bank

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12 December 2020

Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses

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12 December 2020

ValLigURL: a server for ligand-structure comparison and validation

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12 December 2020

Structural basis for proteolysis-dependent activation of the poliovirus RNA-dependent RNA polymerase

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12 December 2020

BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities

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12 December 2020

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12 December 2020

Finding and filling protein cavities using cellular logic operations

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12 December 2020

Nuclear Magnetic Resonance Structure of the N-Terminal Domain of Nonstructural Protein 3 from the Severe Acute Respiratory Syndrome Coronavirus

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12 December 2020

COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance

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12 December 2020

Evidence for emergence of diverse polioviruses from C-cluster coxsackie A viruses and implications for global poliovirus eradication

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12 December 2020

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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12 December 2020

Detection, delineation, measurement and display of cavities in macromolecular structures

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12 December 2020

Where freedom is given, liberties are taken

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12 December 2020

Improved general regression network for protein domain boundary prediction.

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12 December 2020

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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12 December 2020

Sequence-based prediction of protein domains.

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12 December 2020

Protein-primed RNA synthesis by purified poliovirus RNA polymerase

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12 December 2020

10.1016/J.ANTIVIRAL.2010.02.005

Identifiers

DOI

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22 August 2017

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