Comparative Transcriptomics of Malaria Mosquito Testes: Function, Evolution, and Linkage (Q37746431)

22 August 2017

Comparative Transcriptomics of Malaria Mosquito Testes: Function, Evolution, and Linkage (English)

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22 August 2017

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Bryan J Cassone

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22 August 2017

Raissa G G Kay

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2

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22 August 2017

Matthew P Daugherty

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22 August 2017

Bradley J White

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22 August 2017

3 February 2017

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22 August 2017

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22 August 2017

1127-1136

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describes a project that uses

22 August 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/5386861

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

cites work

Sex Chromosome-wide Transcriptional Suppression and Compensatory Cis-Regulatory Evolution Mediate Gene Expression in the Drosophila Male Germline.

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Dosage Compensation and the Distribution of Sex-Biased Gene Expression in Drosophila: Considerations and Genomic Constraints

22 August 2017

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Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes

22 August 2017

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Dosage Compensation in the African Malaria Mosquito Anopheles gambiae

22 August 2017

1 reference

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limma powers differential expression analyses for RNA-sequencing and microarray studies

22 August 2017

1 reference

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Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes

22 August 2017

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VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

22 August 2017

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Sperm competition and the evolution of spermatogenesis

22 August 2017

1 reference

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Conflict on the sex chromosomes: cause, effect, and complexity.

22 August 2017

1 reference

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Origin and spread of de novo genes in Drosophila melanogaster populations

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Large-scale gene function analysis with the PANTHER classification system

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Six novel Y chromosome genes in Anopheles mosquitoes discovered by independently sequencing males and females.

22 August 2017

1 reference

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The evolutionary causes and consequences of sex-biased gene expression

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Meiotic sex chromosome inactivation is disrupted in sterile hybrid male house mice

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Sex-biased transcriptome evolution in Drosophila

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Repeated evolution of testis-specific new genes: the case of telomere-capping genes in Drosophila

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Demasculinization of the Anopheles gambiae X chromosome.

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Role of testis-specific gene expression in sex-chromosome evolution of Anopheles gambiae.

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Sex chromosome-specific regulation in the Drosophila male germline but little evidence for chromosomal dosage compensation or meiotic inactivation

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Intralocus sexual conflict resolved through gene duplication

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Haldane's rule in the 21st century

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

De novo assembly and analysis of RNA-seq data.

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Haldane's rule is extended to plants with sex chromosomes

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Origins, evolution, and phenotypic impact of new genes.

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the flour beetle

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Genetic conflict and sex chromosome evolution

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Sterile-insect methods for control of mosquito-borne diseases: an analysis

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

De novo transcriptome assembly with ABySS.

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Mapping and quantifying mammalian transcriptomes by RNA-Seq

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Demasculinization of X chromosomes in the Drosophila genus

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Constraint and turnover in sex-biased gene expression in the genus Drosophila

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

The evolution of sex-biased genes and sex-biased gene expression

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Meiotic silencing and the epigenetics of sex

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Minimus: a fast, lightweight genome assembler

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

OrfPredictor: predicting protein-coding regions in EST-derived sequences

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Rapid evolution of male-biased gene expression in Drosophila

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Paucity of genes on the Drosophila X chromosome showing male-biased expression

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

X-chromosome silencing in the germline of C. elegans

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

CAP3: A DNA sequence assembly program

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Extraordinary sex ratios. A sex-ratio theory for sex linkage and inbreeding has new implications in cytogenetics and entomology

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Field attempt to assess the mating competitiveness of sterile males produced by crossing 2 member species of the Anopheles gambiae complex

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

The potential use of sterile hybrid males for the eradication of member species of the Anopheles gambiae complex

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Genetic scrambling as a defence against meiotic drive.

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

The frustrated gene: origins of eukaryotic gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Patterns of postzygotic isolation in Lepidoptera

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Reproductive tract and spermatid abnormalities of hybrid males from reciprocal crosses between Drosophila mojavensis and D. arizonae

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Histone H3 lysine 9 acetylation pattern suggests that X and B chromosomes are silenced during entire male meiosis in a grasshopper.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Nonrandom representation of sex-biased genes on chicken Z chromosome

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Deletions on mouse Yq lead to upregulation of multiple X- and Y-linked transcripts in spermatids.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

A global profile of germline gene expression in C. elegans

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

1 September 2018

Extraordinary Sex Ratios

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386861

Reduced male fertility is common but highly variable in form and severity in a natural house mouse hybrid zone

1 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28159865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

X inactivation in mammalian testis is correlated with inactive X-specific transcription

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28159865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1534/G3.117.040089

1 reference

22 August 2017

1 reference

22 August 2017

PubMed publication ID

28159865

1 reference