Metal ion-based RNA cleavage as a structural probe (Q37800197)

23 August 2017

Metal ion-based RNA cleavage as a structural probe (English)

1 reference

23 August 2017

Marcello Forconi

1

1 reference

PubMed ID

20946766

23 August 2017

Daniel Herschlag

series ordinal

2

1 reference

PubMed ID

20946766

23 August 2017

language of work or name

English

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publication date

17 November 2009

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23 August 2017

Methods in Enzymology

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23 August 2017

468

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23 August 2017

91-106

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Thiophilic metal ion rescue of phosphorothioate interference within the Tetrahymena ribozyme P4-P6 domain

23 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Monitoring the structure of Escherichia coli RNase P RNA in the presence of various divalent metal ions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Effects of metal ions, including Mg2+ and lanthanides, on the cleavage of ribonucleotides and RNA model compounds

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Interaction of metal ions with nucleic acids and related compounds. XVII. On the mechanism of degradation of polyribonucleotides and oligoribonucleotides by zinc(II) ions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Analysis of magnesium, europium and lead binding sites in methionine initiator and elongator tRNAs by specific metal-ion-induced cleavages.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Probing Ribosome Structure by Europium-Induced RNA Cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Depolymerization of ribonucleic acid by plumbous ion

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

The role of metal ions in RNA catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Towards artificial ribonucleases: the sequence-specific cleavage of RNA in a duplex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

HIV-1 nucleocapsid protein zinc finger structures induce tRNA(Lys,3) structural changes but are not critical for primer/template annealing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

THE ACTION OF METAL IONS ON TOBACCO MOSAIC VIRUS RIBONUCLEIC ACID.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Creating RNA bulges: cleavage of RNA in RNA/DNA duplexes by metal ion catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

A crystallographic study of metal-binding to yeast phenylalanine transfer RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Trans-acting hepatitis delta virus ribozyme: catalytic core and global structure are dependent on the 5' substrate sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Site-specific cleavage by metal ion cofactors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Presence of a coordinated metal ion in a trans-acting antigenomic delta ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Direct pK(a) measurement of the active-site cytosine in a genomic hepatitis delta virus ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Sequential Folding of the Genomic Ribozyme of the Hepatitis Delta Virus: Structural Analysis of RNA Transcription Intermediates

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

The effect of secondary structure on cleavage of the phosphodiester bonds of RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Applications of uranyl cleavage mapping of RNA structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Reaction pathway of the trans-acting hepatitis delta virus ribozyme: a conformational change accompanies catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Structural Requirement for Mg2+ Binding in the Group I Intron Core

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

In-line probing analysis of riboswitches

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Inhibition of the self-cleavage reaction of the human hepatitis delta virus ribozyme by antibiotics

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Characterization of two RNA-catalyzed RNA cleavage reactions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Relationship between internucleotide linkage geometry and the stability of RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Structural metals in the group I intron: a ribozyme with a multiple metal ion core

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Lead cleavage sites in the core structure of group I intron-RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Cleavage reaction of HDV ribozymes in the presence of Mg2+ is accompanied by a conformational change

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Low specificity of metal ion binding in the metal ion core of a folded RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Pseudo-rotation in the hydrolysis of phosphate esters

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Lead-catalysed specific cleavage of ribosomal RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Metal ion-dependent hydrolysis of RNA phosphodiester bonds within hairpin loops. A comparative kinetic study on chimeric ribo/2'-O-methylribo oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

Engineered allosteric ribozymes that respond to specific divalent metal ions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968005-8

7 January 2021

10.1016/S0076-6879(09)68005-8

Identifiers

DOI

1 reference

23 August 2017

1 reference

PubMed ID

20946766