Protein-protein interactions: making sense of networks via graph-theoretic modeling (Q37824310)

23 August 2017

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title

Protein-protein interactions: making sense of networks via graph-theoretic modeling (English)

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protein-protein interaction

23 August 2017

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1

Nataša Pržulj

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PubMed ID

21188720

23 August 2017

language of work or name

English

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publication date

1 February 2011

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23 August 2017

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23 August 2017

33

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23 August 2017

115-123

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23 August 2017

2

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Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

23 August 2017

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

A map of the interactome network of the metazoan C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

A protein interaction map of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

A human protein-protein interaction network: a resource for annotating the proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Towards a proteome-scale map of the human protein–protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Global mapping of the yeast genetic interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

The protein-protein interaction map of Helicobacter pylori

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

A proteome-wide protein interaction map for Campylobacter jejuni

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

A protein interaction network of the malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

VirusMINT: a viral protein interaction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Comparative assessment of large-scale data sets of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Complex networks and simple models in biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Subnets of scale-free networks are not scale-free: sampling properties of networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

The effects of incomplete protein interaction data on structural and evolutionary inferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Protein-protein interaction networks and biology--what's the connection?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Challenges and rewards of interaction proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

The large-scale organization of metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Lethality and centrality in protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Gene essentiality and the topology of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Self-similarity of complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Coarse-graining and self-dissimilarity of complex networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Stratus not altocumulus: a new view of the yeast protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Confirmation of organized modularity in the yeast interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Still stratus not altocumulus: further evidence against the date/party hub distinction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Back to the biology in systems biology: what can we learn from biomolecular networks?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Unraveling protein interaction networks with near-optimal efficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Efficient estimation of graphlet frequency distributions in protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Geometric de-noising of protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

The Structure and Function of Complex Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Emergence of Scaling in Random Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Modeling interactome: scale-free or geometric?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Collective dynamics of 'small-world' networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Network motifs: simple building blocks of complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Network motifs in the transcriptional regulation network of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Superfamilies of evolved and designed networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Network motifs: theory and experimental approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Comment on "Network motifs: simple building blocks of complex networks" and "Superfamilies of evolved and designed networks".

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Biological network comparison using graphlet degree distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Random graphs with arbitrary degree distributions and their applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Fitting a geometric graph to a protein-protein interaction network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Modeling cellular machinery through biological network comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

An empirical framework for binary interactome mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

PathBLAST: a tool for alignment of protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Local graph alignment and motif search in biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Graemlin: general and robust alignment of multiple large interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Cross-species analysis of biological networks by Bayesian alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Conserved patterns of protein interaction in multiple species

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Pairwise alignment of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Global alignment of protein-protein interaction networks by graph matching methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

IsoRankN: spectral methods for global alignment of multiple protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Topological network alignment uncovers biological function and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Optimal network alignment with graphlet degree vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Network-based prediction of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Protein networks in disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

High-quality binary protein interaction map of the yeast interactome network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

From evidence to inference: probing the evolution of protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Functional topology in a network of protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Literature-curated protein interaction datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Analyzing yeast protein-protein interaction data obtained from different sources

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

A network of protein-protein interactions in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Global protein function prediction from protein-protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Whole-genome annotation by using evidence integration in functional-linkage networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

An automated method for finding molecular complexes in large protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Protein complex prediction via cost-based clustering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Protein complex prediction based on simultaneous protein interaction network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Global topological features of cancer proteins in the human interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

The human disease network

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIES.201000044

Associating genes and protein complexes with disease via network propagation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Predicting cancer involvement of genes from heterogeneous data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Towards a Theory of Scale-Free Graphs: Definition, Properties, and Implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

Effect of sampling on topology predictions of protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000044

21 January 2018

Identifiers

DOI

10.1002/BIES.201000044

1 reference

23 August 2017

1 reference

PubMed ID

21188720