Systematic characterization of protein-DNA interactions (Q37826102)

23 August 2017

1 reference

title

Systematic characterization of protein-DNA interactions (English)

1 reference

23 August 2017

Zhi Xie

1

1 reference

23 August 2017

Shaohui Hu

2

1 reference

23 August 2017

Jiang Qian

3

1 reference

23 August 2017

Seth Blackshaw

4

1 reference

23 August 2017

Heng Zhu

5

1 reference

23 August 2017

publication date

5 January 2011

1 reference

Cellular and Molecular Life Sciences

23 August 2017

published in

1 reference

23 August 2017

volume

68

1 reference

23 August 2017

issue

10

1 reference

23 August 2017

page(s)

1657-1668

1 reference

Transcription factors as targets for cancer therapy

23 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Footprinting: A method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

TRANSFAC: a database on transcription factors and their DNA binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A census of human transcription factors: function, expression and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

ChIPping away at gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Genome-wide location and function of DNA binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A global map of p53 transcription-factor binding sites in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Genome-wide mapping of in vivo protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Transcriptional regulatory code of a eukaryotic genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Transcriptional regulatory networks in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Distinguishing direct versus indirect transcription factor-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Defining the sequence-recognition profile of DNA-binding molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

High-resolution DNA-binding specificity analysis of yeast transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Diversity and complexity in DNA recognition by transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Identification of novel DNA binding targets and regulatory domains of a murine tinman homeodomain factor, nkx-2.5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Molecular cloning of olfactomedin, an extracellular matrix protein specific to olfactory neuroepithelium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Isolation of ORC6, a component of the yeast origin recognition complex by a one-hybrid system

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A gateway-compatible yeast one-hybrid system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A gene-centered C. elegans protein-DNA interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Applications of protein microarray technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

RNA-binding proteins that inhibit RNA virus infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Lectin microarrays identify cell-specific and functionally significant cell surface glycan markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Protein array identification of substrates of the Epstein-Barr virus protein kinase BGLF4

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Functional characterization of heterogeneous nuclear ribonuclear protein C1/C2 in vitamin D resistance: a novel response element-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Regulation of gene expression by a metabolic enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Linking DNA-binding proteins to their recognition sequences by using protein microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Global analysis of protein phosphorylation in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Global analysis of protein activities using proteome chips

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Understanding protein phosphorylation on a systems level

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A universal framework for regulatory element discovery across all genomes and data types

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A lexicon for homeodomain-DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A single amino acid can determine the DNA binding specificity of homeodomain proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

MAP-ping unconventional protein-DNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Moonlighting proteins in yeasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Moonlighting proteins: an intriguing mode of multitasking

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Identification of novel steroid target genes through the combination of bioinformatics and functional analysis of hormone response elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Coregulator codes of transcriptional regulation by nuclear receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Nucleosome positioning can affect the function of a cis-acting DNA element in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Identification of antibodies against HAI-1 and integrin alpha6beta4 as immunohistochemical markers of human villous cytotrophoblast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Specificity landscapes of DNA binding molecules elucidate biological function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

Origins of specificity in protein-DNA recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-010-0617-Y

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/21207099

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

hPDI: a database of experimental human protein-DNA interactions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21207099

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Use of gel retardation to analyze protein-nucleic acid interactions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21207099

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00018-010-0617-Y

1 reference

23 August 2017

1 reference