Protein and peptide fractionation, enrichment and depletion: tools for the complex proteome (Q37829409)

24 August 2017

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title

Protein and peptide fractionation, enrichment and depletion: tools for the complex proteome (English)

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24 August 2017

Linda Ly

1

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24 August 2017

Valerie C Wasinger

series ordinal

2

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24 August 2017

language of work or name

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17 January 2011

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24 August 2017

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24 August 2017

volume

11

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24 August 2017

issue

4

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24 August 2017

page(s)

513-534

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24 August 2017

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Protein identification assisted by the prediction of retention time in liquid chromatography/tandem mass spectrometry

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Use of peptide retention time prediction for protein identification by off-line reversed-phase HPLC-MALDI MS/MS.

21 January 2018

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Optimizing the peak capacity per unit time in one-dimensional and off-line two-dimensional liquid chromatography for the separation of complex peptide samples.

21 January 2018

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Proteomics analysis of prefractionated human lumbar cerebrospinal fluid

21 January 2018

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Reversed-phase high-performance liquid chromatographic prefractionation of immunodepleted human serum proteins to enhance mass spectrometry identification of lower-abundant proteins

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Liquid chromatography mass spectrometry profiling of histones

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Multidimensional chromatography coupled to mass spectrometry in analysing complex proteomics samples.

21 January 2018

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Nipple aspirate fluid proteome of healthy females and patients with breast cancer

21 January 2018

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Separation of the neuroproteome by ion exchange chromatography.

21 January 2018

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A gel-free approach in vascular smooth muscle cell proteome: perspectives for a better insight into activation

21 January 2018

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Enriching basic and acidic rat brain proteins with ion exchange mini spin columns before two-dimensional gel electrophoresis

21 January 2018

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Large scale depletion of the high-abundance proteins and analysis of middle- and low-abundance proteins in human liver proteome by multidimensional liquid chromatography

21 January 2018

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Column chromatographic prefractionation leads to the detection of 543 different gene products in human fetal brain

21 January 2018

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Enrichment of the basic/cationic urinary proteome using ion exchange chromatography and batch adsorption

21 January 2018

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Changes in the levels of low-abundance brain proteins induced by kainic acid

21 January 2018

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Prefractionation techniques in proteome analysis.

21 January 2018

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Protein separations with induced pH gradients using cation-exchange chromatographic columns containing weak acid groups

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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pI-based fractionation of serum proteomes versus anion exchange after enhancement of low-abundance proteins by means of peptide libraries.

21 January 2018

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Direct analysis of protein complexes using mass spectrometry

21 January 2018

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21 January 2018

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

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Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture

21 January 2018

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Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT).

21 January 2018

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HPLC techniques for proteomics analysis--a short overview of latest developments.

21 January 2018

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Analysis of the Oryza sativa plasma membrane proteome using combined protein and peptide fractionation approaches in conjunction with mass spectrometry

21 January 2018

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Proteomics identification of proteins in human cortex using multidimensional separations and MALDI tandem mass spectrometer

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Multidimensional proteome analysis of human mammary epithelial cells

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Multidimensional nano-HPLC for analysis of protein complexes.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Two-dimensional nano-liquid chromatography-mass spectrometry system for applications in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Using size exclusion chromatography-RPLC and RPLC-CIEF as two-dimensional separation strategies for protein profiling

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Multiplexed proteomic reactor for the processing of proteomic samples

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Comprehensive three-dimensional separation of peptides using size exclusion chromatography/reversed phase liquid chromatography/optically gated capillary zone electrophoresis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

The Medicago truncatula small protein proteome and peptidome

21 January 2018

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A combinatorial approach to studying protein complex composition by employing size-exclusion chromatography and proteome analysis

21 January 2018

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Selective on-line serum peptide extraction and multidimensional separation by coupling a restricted-access material-based capillary trap column with nanoliquid chromatography-tandem mass spectrometry

21 January 2018

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TiO(2)-based phosphoproteomic analysis of the plasma membrane and the effects of phosphatase inhibitor treatment

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

A comparative phosphoproteomic analysis of a human tumor metastasis model using a label-free quantitative approach

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Characterization of the human cerebrospinal fluid phosphoproteome by titanium dioxide affinity chromatography and mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Enhanced detection and identification of multiply phosphorylated peptides using TiO2 enrichment in combination with MALDI TOF/TOF MS.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

21 January 2018

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Highly selective enrichment of phosphorylated peptides using titanium dioxide

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Phosphoproteomic analysis of Leishmania donovani pro- and amastigote stages.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Purification of lipases, phospholipases and kinases by heparin-Sepharose chromatography

21 January 2018

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Fractionation of Cytosolic Proteins on an Immobilized Heparin Column

21 January 2018

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Heparin chromatography to deplete high-abundance proteins for serum proteomics

21 January 2018

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Comparison of chromatographic ion-exchange resins IV. Strong and weak cation-exchange resins and heparin resins.

21 January 2018

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A two step fractionation approach for plasma proteomics using immunodepletion of abundant proteins and multi-lectin affinity chromatography: Application to the analysis of obesity, diabetes, and hypertension diseases

21 January 2018

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Combining results from lectin affinity chromatography and glycocapture approaches substantially improves the coverage of the glycoproteome

21 January 2018

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Strategies for analysis of glycoprotein glycosylation

21 January 2018

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Glycosylated ovine prolactin

21 January 2018

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Biotinylation reagents for the study of cell surface proteins

21 January 2018

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Identification of novel surface proteins of Anaplasma phagocytophilum by affinity purification and proteomics

21 January 2018

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Proteomic identification of endothelial proteins isolated in situ from atherosclerotic aorta via systemic perfusion

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Cell membrane proteomic analysis identifies proteins differentially expressed in osteotropic human breast cancer cells

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

In vivo protein biotinylation for identification of organ-specific antigens accessible from the vasculature

21 January 2018

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Technologies for bacterial surface proteomics.

21 January 2018

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The properties of subunits of avidin coupled to Sepharose

21 January 2018

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Characterization of the renal cyst fluid proteome in autosomal dominant polycystic kidney disease (ADPKD) patients

21 January 2018

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Immunoaffinity separation of plasma proteins by IgY microbeads: meeting the needs of proteomic sample preparation and analysis

21 January 2018

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Rat plasma proteomics: effects of abundant protein depletion on proteomic analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Evaluation of protein depletion methods for the analysis of total-, phospho- and glycoproteins in lumbar cerebrospinal fluid

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Quality control of serum albumin depletion for proteomic analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Depletion of abundant proteins from non-human primate serum for biomarker studies

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Differences among techniques for high-abundant protein depletion

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Multi-component immunoaffinity subtraction chromatography: an innovative step towards a comprehensive survey of the human plasma proteome

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Binding of immunoglobulins to protein A and immunoglobulin levels in mammalian sera

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Mining the human cerebrospinal fluid proteome by immunodepletion and shotgun mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

The ProteoMiner and the FortyNiners: searching for gold nuggets in the proteomic arena

21 January 2018

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The ProteoMiner in the proteomic arena: a non-depleting tool for discovering low-abundance species

21 January 2018

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Proteomic analysis of human blood serum using peptide library beads

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Exploring the hidden human urinary proteome via ligand library beads

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Capturing and amplifying impurities from purified recombinant monoclonal antibodies via peptide library beads: a proteomic study

21 January 2018

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Sherlock Holmes and the proteome--a detective story

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Combinatorial hexapeptide ligand libraries (ProteoMiner): an innovative fractionation tool for differential quantitative clinical proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Protein Equalizer Technology : the quest for a "democratic proteome".

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Recycling isoelectric focusing and isotachophoresis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Prefractionation techniques in proteome analysis: the mining tools of the third millennium

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Improved method for proteome mapping of the liver by 2-DE MALDI-TOF MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Evaluation of sample fractionation using micro-scale liquid-phase isoelectric focusing on mass spectrometric identification and quantitation of proteins in a SILAC experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Gel-free IEF in a membrane-sealed multicompartment cell for proteome prefractionation

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Isoelectric focusing in immobilized pH gradients: Principle, methodology and some applications

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Mass distribution and focusing properties of carrier ampholytes for isoelectric focusing: I. Novel and unexpected results.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

A turning point in proteome analysis: sample prefractionation via multicompartment electrolyzers with isoelectric membranes

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Sample complexity reduction for two-dimensional electrophoresis using solution isoelectric focusing prefractionation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Isoelectric beads for proteome pre-fractionation. II: experimental evaluation in a multicompartment electrolyzer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Use of solution-IEF-fractionation leads to separation of 2673 mouse brain proteins including 255 hydrophobic structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Enhanced analysis of human breast cancer proteomes using micro-scale solution isoelectrofocusing combined with high resolution 1-D and 2-D gels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Narrow-band fractionation of proteins from whole cell lysates using isoelectric membrane focusing and nonporous reversed-phase separations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Proteome analysis of human plasma and amniotic fluid by Off-Gel isoelectric focusing followed by nano-LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Protein fractionation in a multicompartment device using Off-Gel isoelectric focusing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Peptide separations by on-line MudPIT compared to isoelectric focusing in an off-gel format: application to a membrane-enriched fraction from C2C12 mouse skeletal muscle cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Shotgun proteomic analysis of cerebrospinal fluid using off-gel electrophoresis as the first-dimension separation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Efficient fractionation and improved protein identification by peptide OFFGEL electrophoresis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

A miniaturized multichamber solution isoelectric focusing device for separation of protein digests

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Improved proteome analysis of Saccharomyces cerevisiae mitochondria by free-flow electrophoresis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Different temperature sensitivity of endosomes involved in transport to lysosomes and transcytosis in rat hepatocytes: analysis by free-flow electrophoresis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Proteomic analysis of plasma membrane and secretory vesicles from human neutrophils

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

A comprehensive proteomics and genomics analysis reveals novel transmembrane proteins in human platelets and mouse megakaryocytes including G6b-B, a novel immunoreceptor tyrosine-based inhibitory motif protein

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Quantitative proteomics of the tonoplast reveals a role for glycolytic enzymes in salt tolerance

21 January 2018

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Application of 2-D free-flow electrophoresis/RP-HPLC for proteomic analysis of human plasma depleted of multi high-abundance proteins

21 January 2018

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Free-flow electrophoresis system for proteomics applications

21 January 2018

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Efficient separation and analysis of peroxisomal membrane proteins using free-flow isoelectric focusing

21 January 2018

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Free flow electrophoresis coupled with liquid chromatography-mass spectrometry for a proteomic study of the human cell line (K562/CR3).

21 January 2018

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Two-dimensional separation of human plasma proteins using iterative free-flow electrophoresis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Application of free flow electrophoresis to the analysis of the urine proteome

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201000394

Microfluidic high-resolution free-flow isoelectric focusing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Cascaded free-flow isoelectric focusing for improved focusing speed and resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Free-flow zone electrophoresis of peptides and proteins in PDMS microchip for narrow pI range sample prefractionation coupled with mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Microfluidic preparative free-flow isoelectric focusing: system optimization for protein complex separation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Combining capillary electrophoresis with mass spectrometry for applications in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Capillary electrophoresis-based separation techniques for the analysis of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Capillary electrophoresis-mass spectrometry as a powerful tool in clinical diagnosis and biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Two-dimensional liquid chromatography-capillary zone electrophoresis-sheathless electrospray ionization-mass spectrometry: evaluation for peptide analysis and protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Human plasma proteome analysis by multidimensional chromatography prefractionation and linear ion trap mass spectrometry identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Field-enhanced sample injection for high-sensitivity analysis of peptides and proteins in capillary electrophoresis-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Sample enrichment techniques in capillary electrophoresis: focus on peptides and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

An integrated procedure of selective injection, sample stacking and fractionation of phosphopeptides for MALDI MS analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Capillary electrophoresis-mass spectrometry: 15 years of developments and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Integration of capillary isoelectric focusing with capillary reversed-phase liquid chromatography for two-dimensional proteomics separation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Intact protein profiling of Chlorobium tepidum by capillary isoelectric focusing, reversed-phase liquid chromatography, and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Comparative proteomic study of two closely related ovarian endometrioid adenocarcinoma cell lines using cIEF fractionation and pathway analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Prefractionation, enrichment, desalting and depleting of low volume and low abundance proteins and peptides using the MF10.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Peptide enrichment and protein fractionation using selective electrophoresis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Membrane Proteome Analysis of Microdissected Ovarian Tumor Tissues Using Capillary Isoelectric Focusing/Reversed-Phase Liquid Chromatography−Tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

Automated, on-line two-dimensional nano liquid chromatography tandem mass spectrometry for rapid analysis of complex protein digests

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

EnhancedN-Glycosylation Site Analysis of Sialoglycopeptides by Strong Cation Exchange Prefractionation Applied to Platelet Plasma Membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

High-Efficiency Capillary Isoelectric Focusing of Peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201000394

21 January 2018

Identifiers

DOI

10.1002/PMIC.201000394

1 reference

24 August 2017

1 reference