Time-dependent rates of molecular evolution (Q37899266)

25 August 2017

1 reference

title

Time-dependent rates of molecular evolution (English)

1 reference

25 August 2017

2

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25 August 2017

3

Lindell Bromham

1 reference

25 August 2017

Allen G Rodrigo

6

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Alan J. Cooper

object named as

Alan Cooper

series ordinal

7

0 references

Simon Y. W. Ho

series ordinal

1

object named as

Simon Y W Ho

1 reference

25 August 2017

Matthew J Phillips

4

1 reference

PubMed ID

21740474

25 August 2017

Julien Soubrier

series ordinal

5

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25 August 2017

8 July 2011

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25 August 2017

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25 August 2017

20

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25 August 2017

15

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25 August 2017

3087-3101

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Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications.

25 August 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The incomplete natural history of mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Inheritance and recombination of mitochondrial genomes in plants, fungi and animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Mitochondrial Steve: paternal inheritance of mitochondria in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Geological dates and molecular rates: fish DNA sheds light on time dependency

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The rise, fall and renaissance of microsatellites in eukaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Late-Quaternary biogeographic scenarios for the brown bear (Ursus arctos), a wild mammal model species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Time dependency of molecular rates in ancient DNA data sets, a sampling artifact?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian random local clocks, or one rate to rule them all

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Measurably evolving populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian coalescent inference of past population dynamics from molecular sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Rates of evolutionary change in viruses: patterns and determinants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Comparative genomics and the evolution of human mitochondrial DNA: assessing the effects of selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Alarm bells for the molecular clock? No support for Ho et al.'s model of time-dependent molecular rate estimates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

A Bayesian evaluation of human mitochondrial substitution rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Evaluating the mitochondrial timescale of human evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The distribution of fitness effects of new mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

A recalibrated molecular clock and independent origins for the cholera pandemic clones

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

A short tandem repeat-based phylogeny for the human Y chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Mitochondrial DNA as a marker of molecular diversity: a reappraisal.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Age of cichlids: new dates for ancient lake fish radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Calibrating the mitochondrial clock.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Time--the emerging dimension of plant virus studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Rates of evolution: effects of time and temporal scaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Rates of evolution on the time scale of the evolutionary process

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCR amplification kit

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The mode and tempo of hepatitis C virus evolution within and among hosts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Direct estimation of the mitochondrial DNA mutation rate in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Rapid molecular evolution in a living fossil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian inference of population size history from multiple loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Characterizing the time dependency of human mitochondrial DNA mutation rate estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Molecular clocks: when times are a-changin'

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian estimation of sequence damage in ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Elevated substitution rates estimated from ancient DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Evidence for time dependency of molecular rate estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The effect of inappropriate calibration: three case studies in molecular ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian estimation of substitution rates from ancient DNA sequences with low information content

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

21 January 2018

Reply to Macauley et al

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The pedigree rate of sequence divergence in the human mitochondrial genome: there is a difference between phylogenetic and pedigree rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Accounting for bias from sequencing error in population genetic estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Genetic analysis of early holocene skeletal remains from Alaska and its implications for the settlement of the Americas

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Evolutionary Rate at the Molecular Level

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Utility of DNA viruses for studying human host history: case study of JC virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Rates of Evolution in Fossil Mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Rates of evolution in ancient DNA from Adélie penguins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

A Bayesian statistical analysis of human T-cell lymphotropic virus evolutionary rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The importance of proper model assumption in bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

On the origin of smallpox: correlating variola phylogenics with historical smallpox records

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Instability and decay of the primary structure of DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Explaining the imperfection of the molecular clock of hominid mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

mtDNA mutation rates--no need to panic

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the isthmus of panama

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian inference of errors in ancient DNA caused by postmortem degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Mutation and evolutionary rates in adélie penguins from the antarctic

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The evolutionary rate of tuatara revisited.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Natural selection shaped regional mtDNA variation in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The coalescent and the genealogical process in geographically structured population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

A continuous-state coalescent and the impact of weak selection on the structure of gene genealogies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Slightly Deleterious Mutant Substitutions in Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The Nearly Neutral Theory of Molecular Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

A high observed substitution rate in the human mitochondrial DNA control region

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Quantitative prediction of molecular clock and ka/ks at short timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Evolutionary analysis of the dynamics of viral infectious disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Phylogeography and postglacial expansion of Mus musculus domesticus inferred from mitochondrial DNA coalescent, from Iran to Europe.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Accommodating the effect of ancient DNA damage on inferences of demographic histories

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

High rates of molecular evolution in hantaviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Experimental estimation of mutation rates in a wheat population with a gene genealogy approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Diversification and host switching in avian malaria parasites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Comparisons of dN/dS are time dependent for closely related bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The perils of plenty: what are we going to do with all these genes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Effects of purifying and adaptive selection on regional variation in human mtDNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Understanding differences between phylogenetic and pedigree-derived mtDNA mutation rate: a model using families from the Azores Islands (Portugal).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Mutation patterns of mtDNA: empirical inferences for the coding region

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Paternal inheritance of mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

A Bayesian phylogenetic method to estimate unknown sequence ages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The origins of acquired immune deficiency syndrome viruses: where and when?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The mutation rate in the human mtDNA control region

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Correcting for purifying selection: an improved human mitochondrial molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Strong purifying selection in transmission of mammalian mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Temporal trails of natural selection in human mitogenomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

High mitogenomic evolutionary rates and time dependency.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Model Selection in Phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Initial genetic characterization of the 1918 "Spanish" influenza virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Widespread recombination in published animal mtDNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Improving global and regional resolution of male lineage differentiation by simple single-copy Y-chromosomal short tandem repeat polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Revealing the hidden complexities of mtDNA inheritance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Ancient biomolecules from deep ice cores reveal a forested southern Greenland

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The genealogy of a sequence subject to purifying selection at multiple sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Can deleterious mutations explain the time dependency of molecular rate estimates?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Human Y chromosome base-substitution mutation rate measured by direct sequencing in a deep-rooting pedigree

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Estimation of primate speciation dates using local molecular clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Difference between evolutionarily effective and germ line mutation rate due to stochastically varying haplogroup size

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Mutation accumulation and the effect of copia insertions in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

Relativity for molecular clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2011.05178.X

10.1111/J.1365-294X.2011.05178.X

21 January 2018

Identifiers

DOI

1 reference

25 August 2017

1 reference

PubMed ID

21740474