Eukaryotic metabolism: measuring compartment fluxes (Q37930590)

25 August 2017

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title

Eukaryotic metabolism: measuring compartment fluxes (English)

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25 August 2017

3

Elmar Heinzle

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25 August 2017

Judith Wahrheit

1

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25 August 2017

Averina Nicolae

series ordinal

2

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25 August 2017

publication date

29 August 2011

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25 August 2017

published in

Biotechnology Journal

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25 August 2017

volume

6

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25 August 2017

issue

9

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25 August 2017

page(s)

1071-1085

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Compartmentation in plant metabolism

25 August 2017

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Selective permeabilization for the high-throughput measurement of compartmented enzyme activities in mammalian cells.

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Nuclear import in permeabilized protoplasts from higher plants has unique features

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Measuring enzyme activity in single cells

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Systems metabolic engineering: genome-scale models and beyond

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MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.

21 January 2018

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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

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Connecting extracellular metabolomic measurements to intracellular flux states in yeast

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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

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A genome-scale, constraint-based approach to systems biology of human metabolism

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Compartmentalization of the Edinburgh Human Metabolic Network

21 January 2018

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Metabolic flux analysis of hybridoma cells in different culture media using mass balances

21 January 2018

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Thermodynamics-based metabolic flux analysis

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21 January 2018

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Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices

21 January 2018

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Correcting mass isotopomer distributions for naturally occurring isotopes

21 January 2018

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Metabolic flux elucidation for large-scale models using 13C labeled isotopes

21 January 2018

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Hybrid optimization for 13C metabolic flux analysis using systems parametrized by compactification

21 January 2018

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Metabolic flux analysis with a comprehensive isotopomer model in Bacillus subtilis

21 January 2018

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Genealogy profiling through strain improvement by using metabolic network analysis: metabolic flux genealogy of several generations of lysine-producing corynebacteria

21 January 2018

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Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements

21 January 2018

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Evaluation of 13C isotopic tracers for metabolic flux analysis in mammalian cells

21 January 2018

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Design of substrate label for steady state flux measurements in plant systems using the metabolic network of Brassica napus embryos

21 January 2018

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21 January 2018

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21 January 2018

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An elementary metabolite unit (EMU) based method of isotopically nonstationary flux analysis

21 January 2018

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A transient isotopic labeling methodology for 13C metabolic flux analysis of photoautotrophic microorganisms

21 January 2018

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Metabolic flux analysis in Escherichia coli by integrating isotopic dynamic and isotopic stationary 13C labeling data

21 January 2018

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21 January 2018

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21 January 2018

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Identification of metabolic fluxes in hepatic cells from transient 13C-labeling experiments: Part II. Flux estimation

21 January 2018

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Bidirectionality and compartmentation of metabolic fluxes are revealed in the dynamics of isotopomer networks

21 January 2018

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Computational tools for isotopically instationary 13C labeling experiments under metabolic steady state conditions.

21 January 2018

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Effects of spatiotemporal variations on metabolic control: approximate analysis using (log)linear kinetic models

21 January 2018

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Estimation of metabolic fluxes, expression levels and metabolite dynamics of a secondary metabolic pathway in potato using label pulse-feeding experiments combined with kinetic network modelling and simulation

21 January 2018

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Analysis of in vivo kinetics of glycolysis in aerobic Saccharomyces cerevisiae by application of glucose and ethanol pulses

21 January 2018

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Kinetic analysis of dynamic 13C NMR spectra: metabolic flux, regulation, and compartmentation in hearts

21 January 2018

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13C labeling experiments at metabolic nonstationary conditions: an exploratory study.

21 January 2018

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Towards a metabolic and isotopic steady state in CHO batch cultures for reliable isotope-based metabolic profiling.

21 January 2018

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Modeling and experimental design for metabolic flux analysis of lysine-producing Corynebacteria by mass spectrometry

21 January 2018

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Fluxome analysis using GC-MS.

21 January 2018

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21 January 2018

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Intracellular metabolite determination in the presence of extracellular abundance: Application to the penicillin biosynthesis pathway in Penicillium chrysogenum

21 January 2018

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Quantification of intracellular amino acids in batch cultures of Saccharomyces cerevisiae

21 January 2018

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Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation

21 January 2018

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Towards quantitative metabolomics of mammalian cells: development of a metabolite extraction protocol

21 January 2018

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Simultaneous extraction of several metabolites of energy metabolism and related substances in mammalian cells: optimization using experimental design

21 January 2018

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Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria

21 January 2018

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Sampling for metabolome analysis of microorganisms.

21 January 2018

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Fast filtration for metabolome sampling of suspended animal cells.

21 January 2018

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A topological map of the compartmentalized Arabidopsis thaliana leaf metabolome

21 January 2018

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Microtechnology meets systems biology: the small molecules of metabolome as next big targets

21 January 2018

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PROBING PLANT METABOLISM WITH NMR.

21 January 2018

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Imaging approach for monitoring cellular metabolites and ions using genetically encoded biosensors

21 January 2018

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Analysis of 13C labeling enrichment in microbial culture applying metabolic tracer experiments using gas chromatography-combustion-isotope ratio mass spectrometry

21 January 2018

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Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression

21 January 2018

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Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis

21 January 2018

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Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data

21 January 2018

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Quantification of compartmented metabolic fluxes in developing soybean embryos by employing biosynthetically directed fractional (13)C labeling, two-dimensional [(13)C, (1)H] nuclear magnetic resonance, and comprehensive isotopomer balancing.

21 January 2018

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Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labeling

21 January 2018

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Metabolite channeling and compartmentation in the human cell line AGE1.HN determined by 13C labeling experiments and 13C metabolic flux analysis

21 January 2018

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Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data

21 January 2018

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Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.

21 January 2018

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Isotopomer analysis of myocardial substrate metabolism: a systems biology approach

21 January 2018

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Determination of metabolic flux changes during fed-batch cultivation from measurements of intracellular amino acids by LC-MS/MS.

21 January 2018

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13C metabolic flux analysis for larger scale cultivation using gas chromatography-combustion-isotope ratio mass spectrometry

21 January 2018

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Genome-scale metabolic reconstruction and in silico analysis of methylotrophic yeast Pichia pastoris for strain improvement

21 January 2018

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Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts

21 January 2018

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Metabolic flux analysis of CHO cells in perfusion culture by metabolite balancing and 2D [13C, 1H] COSY NMR spectroscopy

21 January 2018

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Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line

21 January 2018

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Ensemble modeling of hepatic fatty acid metabolism with a synthetic glyoxylate shunt

21 January 2018

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Control and regulation of mitochondrial energetics in an integrated model of cardiomyocyte function

21 January 2018

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Metabolic dynamics in skeletal muscle during acute reduction in blood flow and oxygen supply to mitochondria: in-silico studies using a multi-scale, top-down integrated model

21 January 2018

1 reference

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Dynamic model of CHO cell metabolism

21 January 2018

1 reference

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Metabolic flux analysis in a nonstationary system: fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201100032

Carbon flux and fatty acid synthesis in plants

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201100032

Amino Acid and sucrose content determined in the cytosolic, chloroplastic, and vacuolar compartments and in the Phloem sap of spinach leaves

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201100032

Comparison of quantitative metabolite imaging tools and carbon-13 techniques for fluxomics.

21 January 2018

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Fluxomics: mass spectrometry versus quantitative imaging

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201100032

Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics

21 January 2018

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Sample preparation for plant metabolomics

21 January 2018

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Appropriate sampling for intracellular amino acid analysis in five phylogenetically different yeasts

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/BIOT.201100032

1 reference

release_5idoeikx6rh3pckdun7akqudtq

25 August 2017

Fatcat ID

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https://api.fatcat.wiki/v0/release/5idoeikx6rh3pckdun7akqudtq

mapped directly with Wikidata item

24 November 2022

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