Horizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role (Q37941835)

25 August 2017

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title

Horizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role (English)

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25 August 2017

Jun Zhang

3

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author name string

Bin Liang

1

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25 August 2017

Jiandong Jiang

2

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25 August 2017

Yanfu Zhao

4

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25 August 2017

Shunpeng Li

5

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25 August 2017

language of work or name

English

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publication date

4 October 2011

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Critical Reviews in Microbiology

25 August 2017

published in

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25 August 2017

volume

38

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25 August 2017

issue

2

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25 August 2017

page(s)

95-110

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maintained by WikiProject

25 August 2017

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16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains

1 reference

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Genetic organization of a plasmid from an industrial wastewater bioreactor

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Isolation and characterization of an atrazine-degrading bacterium from industrial wastewater in China.

21 January 2018

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Evolution of a metabolic pathway for degradation of a toxic xenobiotic: the patchwork approach

21 January 2018

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The recent evolution of pentachlorophenol (PCP)-4-monooxygenase (PcpB) and associated pathways for bacterial degradation of PCP.

21 January 2018

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Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization

21 January 2018

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FREQUENCY OF DELETIONS AMONG SPONTANEOUS AND INDUCED MUTATIONS IN SALMONELLA

21 January 2018

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Detection and organization of atrazine-degrading genetic potential of seventeen bacterial isolates belonging to divergent taxa indicate a recent common origin of their catabolic functions

21 January 2018

1 reference

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Genetic rearrangement of the atzAB atrazine-degrading gene cassette from pADP1::Tn5 to the chromosome of Variovorax sp. MD1 and MD2.

21 January 2018

1 reference

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Fitness drift of an atrazine-degrading population under atrazine selection pressure.

21 January 2018

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Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transfer

21 January 2018

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https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Horizontal gene transfer and bacterial diversity

21 January 2018

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Isolation of a Xanthobacter sp. degrading dichloromethane and characterization of the gene involved in the degradation

21 January 2018

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Transfer and expression of the herbicide-degrading plasmid pJP4 in aerobic autotrophic bacteria

21 January 2018

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Emergence of two types of nondechlorinating variants in the tetrachloroethene-halorespiring Desulfitobacterium sp. strain Y51.

21 January 2018

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Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1.

21 January 2018

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Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13.

21 January 2018

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Isolation and characterization of IS1409, an insertion element of 4-chlorobenzoate-degrading Arthrobacter sp. strain TM1, and development of a system for transposon mutagenesis

21 January 2018

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Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4.

21 January 2018

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Prevalence of lysogeny among soil bacteria and presence of 16S rRNA and trzN genes in viral-community DNA.

21 January 2018

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Horizontal transfer of dehalogenase genes on IncP1beta plasmids during bacterial adaptation to degrade alpha-halocarboxylic acids

21 January 2018

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Field and soil microcosm studies on the survival and conjugation of a Pseudomonas putida strain bearing a recombinant plasmid, pADPTel.

21 January 2018

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A transposon encoding the complete 2,4-dichlorophenoxyacetic acid degradation pathway in the alkalitolerant strain Delftia acidovorans P4a.

21 January 2018

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Dehalobacter restrictus gen. nov. and sp. nov., a strictly anaerobic bacterium that reductively dechlorinates tetra- and trichloroethene in an anaerobic respiration

21 January 2018

1 reference

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Reductive dechlorination in the energy metabolism of anaerobic bacteria

21 January 2018

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Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Genetics and biochemistry of dehalogenating enzymes

21 January 2018

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https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase

21 January 2018

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Genomic islands: tools of bacterial horizontal gene transfer and evolution

21 January 2018

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Expression of the 2,4-D degradative pathway of pJP4 in an alkaliphilic, moderately halophilic soda lake isolate, Halomonas sp. EF43.

21 January 2018

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Horizontal gene transfer in prokaryotes: quantification and classification

21 January 2018

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Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Environmental distribution of the trichloroethene reductive dehalogenase gene (tceA) suggests lateral gene transfer among Dehalococcoides.

21 January 2018

1 reference

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Agronomic and environmental implications of enhanced s-triazine degradation

21 January 2018

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https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1

21 January 2018

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Characterization of IS2112, a new insertion sequence from Rhodococcus, and its relationship with mobile elements belonging to the IS110 family

21 January 2018

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The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064.

21 January 2018

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Cloning and characterization of lin genes responsible for the degradation of Hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90.

21 January 2018

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https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation

21 January 2018

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Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome

21 January 2018

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Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonads

21 January 2018

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https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Genetic characterization of insertion sequence ISJP4 on plasmid pJP4 from Ralstonia eutropha JMP134.

21 January 2018

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https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Hydrolytic dechlorination of chlorothalonil by Ochrobactrum sp. CTN-11 isolated from a chlorothalonil-contaminated soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Facilitation of bacterial adaptation to chlorothalonil-contaminated sites by horizontal transfer of the chlorothalonil hydrolytic dehalogenase gene

21 January 2018

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Transposase-dependent formation of circular IS256 derivatives in Staphylococcus epidermidis and Staphylococcus aureus

21 January 2018

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Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Isolation and characterization of Tn-Dha1, a transposon containing the tetrachloroethene reductive dehalogenase of Desulfitobacterium hafniense strain TCE1.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

A novel reductive dehalogenase, identified in a contaminated groundwater enrichment culture and in Desulfitobacterium dichloroeliminans strain DCA1, is linked to dehalogenation of 1,2-dichloroethane

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Unusual codon bias in vinyl chloride reductase genes of Dehalococcoides species.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Horizontal gene and chromosome transfer in plant pathogenic fungi affecting host range.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Comparative studies on tetrachloroethene reductive dechlorination mediated by Desulfitobacterium sp. strain PCE-S.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Cloning and characterization of linR, involved in regulation of the downstream pathway for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The triazine hydrolase gene trzN from Nocardioides sp. strain C190: cloning and construction of gene-specific primers

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The phylogenetic distribution of a transposable dioxygenase from the Niagara River watershed

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Molecular characterization of dichloromethane-degrading Hyphomicrobium strains using 16S rDNA and DCM dehalogenase gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Lateral gene transfer and the nature of bacterial innovation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4).

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Roles of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1,2-dibromoethane-degradative pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Haloalkane-utilizing Rhodococcus strains isolated from geographically distinct locations possess a highly conserved gene cluster encoding haloalkane catabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Complete characterisation of Tn5530 from Burkholderia cepacia strain 2a (pIJB1) and studies of 2,4-dichlorophenoxyacetate uptake by the organism

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Cloning of the Arthrobacter sp. FG1 dehalogenase genes and construction of hybrid pathways in Pseudomonas putida strains.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Selection for gene clustering by tandem duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Indications for acquisition of reductive dehalogenase genes through horizontal gene transfer by Dehalococcoides ethenogenes strain 195

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Cloning of the chlorothalonil-degrading gene cluster and evidence of its horizontal transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Arthrobacter aurescens TC1 atrazine catabolism genes trzN, atzB, and atzC are linked on a 160-kilobase region and are functional in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Evolution of chlorocatechol catabolic pathways. Conclusions to be drawn from comparisons of lactone hydrolases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Association of newly discovered IS elements with the dichloromethane utilization genes of methylotrophic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Structure of Haloacetate-Catabolic IncP-1β Plasmid pUO1 and Genetic Mobility of Its Residing Haloacetate-Catabolic Transposon

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Molecular characterization of the PceA reductive dehalogenase of desulfitobacterium sp. strain Y51.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Two unusual chlorocatechol catabolic gene clusters in Sphingomonas sp. TFD44.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEH

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading sphingomonads.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Characterization of an atrazine-degrading Pseudaminobacter sp. isolated from Canadian and French agricultural soils

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Mobile catabolic genes in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Genetic potential, diversity and activity of an atrazine-degrading community enriched from a herbicide factory effluent

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pEST4011 of Achromobacter xylosoxidans subsp. denitrificans strain EST4002.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

The Desulfitobacterium genus

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

A novel hydrolytic dehalogenase for the chlorinated aromatic compound chlorothalonil

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Lysobacter ruishenii sp. nov., a chlorothalonil-degrading bacterium isolated from a long-term chlorothalonil-contaminated soil

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

21 January 2018

Catabolic transposons

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F1040841X.2011.618114

10.3109/1040841X.2011.618114

21 January 2018

Identifiers

DOI

1 reference

25 August 2017

1 reference