Recent advances in protein-protein interaction prediction: experimental and computational methods (Q38014488)

27 August 2017

Recent advances in protein-protein interaction prediction: experimental and computational methods (English)

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protein-protein interaction

27 August 2017

computational biology

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based on heuristic

inferred from title

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Matthew Jessulat

1

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27 August 2017

Sylvain Pitre

2

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27 August 2017

Yuan Gui

3

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27 August 2017

Mohsen Hooshyar

4

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27 August 2017

Katayoun Omidi

5

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27 August 2017

Bahram Samanfar

6

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27 August 2017

Le Hoa Tan

7

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27 August 2017

Md Alamgir

8

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27 August 2017

James Green

9

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27 August 2017

Frank Dehne

10

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27 August 2017

Ashkan Golshani

11

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27 August 2017

language of work or name

English

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publication date

29 July 2011

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Expert Opinion on Drug Discovery

27 August 2017

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27 August 2017

6

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27 August 2017

9

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27 August 2017

921-935

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Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties

27 August 2017

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

How reliable are experimental protein-protein interaction data?

21 January 2018

1 reference

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Networking proteins in yeast

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A novel genetic system to detect protein-protein interactions

21 January 2018

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Two-hybrid technologies in proteomics research

21 January 2018

1 reference

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The use of yeast two-hybrid screens in studies of protein:protein interactions involved in trafficking

21 January 2018

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The jury is out on "guilt by association" trials

21 January 2018

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Mammalian two-hybrids come of age.

21 January 2018

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Analysis of membrane protein complexes using the split-ubiquitin membrane yeast two-hybrid (MYTH) system

21 January 2018

1 reference

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A yEGFP-based reporter system for high-throughput yeast two-hybrid assay by flow cytometry

21 January 2018

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Isolation of putative plant transcriptional coactivators using a modified two-hybrid system incorporating a GFP reporter gene

21 January 2018

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A surface display yeast two-hybrid screening system for high-throughput protein interactome mapping

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A Saccharomyces cerevisiae cell-based quantitative beta-galactosidase assay compatible with robotic handling and high-throughput screening.

21 January 2018

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Quantitative Y2H screening: cloning and signal peptide engineering of a fungal secretory LacA gene and its application to yeast two-hybrid system as a quantitative reporter

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Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations

21 January 2018

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A generic protein purification method for protein complex characterization and proteome exploration

21 January 2018

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The tandem affinity purification (TAP) method: a general procedure of protein complex purification

21 January 2018

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New partners of acyl carrier protein detected in Escherichia coli by tandem affinity purification

21 January 2018

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Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants.

21 January 2018

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Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system

21 January 2018

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An efficient protein complex purification method for functional proteomics in higher eukaryotes

21 January 2018

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Vectors for expression of proteins with single or combinatorial fluorescent protein and tandem affinity purification tags in Dictyostelium

21 January 2018

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Interaction network containing conserved and essential protein complexes in Escherichia coli

21 January 2018

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The host-dependent interaction of alpha-importins with influenza PB2 polymerase subunit is required for virus RNA replication

21 January 2018

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A large set of estrogen receptor β-interacting proteins identified by tandem affinity purification in hormone-responsive human breast cancer cell nuclei

21 January 2018

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An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation.

21 January 2018

1 reference

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Tandem affinity purification of protein complexes from mammalian cells by the Strep/FLAG (SF)-TAP tag.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

A novel tandem affinity purification strategy for the efficient isolation and characterisation of native protein complexes

21 January 2018

1 reference

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A novel S3S-TAP-tag for the isolation of T-cell interaction partners of adhesion and degranulation promoting adaptor protein

21 January 2018

1 reference

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An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.

21 January 2018

1 reference

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An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells

21 January 2018

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A novel multiple affinity purification tag and its use in identification of proteins associated with a cyclin-CDK complex

21 January 2018

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Engineering a novel multifunctional green fluorescent protein tag for a wide variety of protein research

21 January 2018

1 reference

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Protein-detecting microarrays: current accomplishments and requirements.

21 January 2018

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Dissecting protein function and signaling using protein microarrays.

21 January 2018

1 reference

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Applications of protein biochips in biomedical and biotechnological research

21 January 2018

1 reference

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Protein microarrays: novel developments and applications

21 January 2018

1 reference

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Recent developments in the site-specific immobilization of proteins onto solid supports

21 January 2018

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Reverse phase protein microarrays advance to use in clinical trials

21 January 2018

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Global analysis of protein activities using proteome chips

21 January 2018

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MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays

21 January 2018

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Protein microarrays for genome-wide posttranslational modification analysis.

21 January 2018

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Targeted therapies: the rare cancer paradigm

21 January 2018

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Prediction of physical protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Learning to predict protein-protein interactions from protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 January 2018

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

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Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences

21 January 2018

1 reference

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Computational methods for the prediction of protein interactions

21 January 2018

1 reference

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PISCES: a protein sequence culling server

21 January 2018

1 reference

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Plant-mPLoc: a top-down strategy to augment the power for predicting plant protein subcellular localization

21 January 2018

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Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

21 January 2018

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Evolutionary rate in the protein interaction network

21 January 2018

1 reference

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21 January 2018

The Protein Data Bank

1 reference

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Interrogating protein interaction networks through structural biology

21 January 2018

1 reference

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Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

21 January 2018

1 reference

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Accuracy of protein-protein binding sites in high-throughput template-based modeling

21 January 2018

1 reference

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Docking by structural similarity at protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

InterPreTS: protein interaction prediction through tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

PRISM: protein interactions by structural matching

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Critical assessment of methods of protein structure prediction - Round VIII.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Evaluation of different biological data and computational classification methods for use in protein interaction prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Active learning for human protein-protein interaction prediction

21 January 2018

1 reference

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Predicting protein-protein interactions in unbalanced data using the primary structure of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting protein-protein interactions using signature products.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Protein-protein interaction based on pairwise similarity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting protein-protein interactions based only on sequences information

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

PRED_PPI: a server for predicting protein-protein interactions based on sequence data with probability assignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Sequence-based prediction of protein-protein interactions by means of codon usage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Exploiting amino acid composition for predicting protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

An ensemble of K-local hyperplanes for predicting protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Large-scale prediction of human protein-protein interactions from amino acid sequence based on latent topic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Detecting protein function and protein-protein interactions from genome sequences

21 January 2018

1 reference

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Predicting protein--protein interactions from primary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting the protein-protein interactions using primary structures with predicted protein surface

21 January 2018

1 reference

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Predicting protein-protein interactions from sequences in a hybridization space

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Prediction of protein cellular attributes using pseudo-amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Simple sequence-based kernels do not predict protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Prediction of protein structural classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Some remarks on protein attribute prediction and pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition.

21 January 2018

1 reference

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Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

21 January 2018

1 reference

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Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Recent progress in protein subcellular location prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Prediction of cyclin proteins using Chou's pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Systematic discovery of new recognition peptides mediating protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

Computational Prediction of Protein–Protein Interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

From Experimental Approaches to Computational Techniques: A Review on the Prediction of Protein-Protein Interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1517%2F17460441.2011.603722

10.1517/17460441.2011.603722

21 January 2018

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DOI

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27 August 2017

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