Role of mass spectrometry-based proteomics in the study of cellular reprogramming and induced pluripotent stem cells (Q38042456)

27 August 2017

Role of mass spectrometry-based proteomics in the study of cellular reprogramming and induced pluripotent stem cells (English)

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27 August 2017

Marco Benevento

1

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PubMed ID

22967076

27 August 2017

Javier Munoz

series ordinal

2

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27 August 2017

1 August 2012

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Expert Review of Proteomics

27 August 2017

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27 August 2017

9

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27 August 2017

4

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27 August 2017

379-399

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Establishment in culture of pluripotential cells from mouse embryos

27 August 2017

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Embryonic stem cell lines derived from human blastocysts

21 January 2018

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Embryonic stem cell lines from human blastocysts: somatic differentiation in vitro

21 January 2018

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Emerging ethical, legal and social issues associated with stem cell research & and the current role of the moral status of the embryo

21 January 2018

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The bioethics of stem cell research and therapy

21 January 2018

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Nuclear transplantation in sheep embryos.

21 January 2018

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Somatic cell nuclear transfer

21 January 2018

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Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

21 January 2018

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Induction of pluripotent stem cells from adult human fibroblasts by defined factors

21 January 2018

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Induced pluripotent stem cell lines derived from human somatic cells

21 January 2018

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Reprogramming of human somatic cells to pluripotency with defined factors

21 January 2018

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Generation of induced pluripotent stem cells from human blood

21 January 2018

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Reprogramming of neural progenitor cells into induced pluripotent stem cells in the absence of exogenous Sox2 expression

21 January 2018

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Direct reprogramming of terminally differentiated mature B lymphocytes to pluripotency

21 January 2018

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A drug-inducible system for direct reprogramming of human somatic cells to pluripotency

21 January 2018

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piggyBac transposition reprograms fibroblasts to induced pluripotent stem cells

21 January 2018

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Generation of human induced pluripotent stem cells by direct delivery of reprogramming proteins

21 January 2018

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Reprogramming of mouse and human cells to pluripotency using mature microRNAs.

21 January 2018

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Harnessing the potential of induced pluripotent stem cells for regenerative medicine

21 January 2018

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Treatment of sickle cell anemia mouse model with iPS cells generated from autologous skin

21 January 2018

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Neurons derived from reprogrammed fibroblasts functionally integrate into the fetal brain and improve symptoms of rats with Parkinson's disease

21 January 2018

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Generation of pluripotent stem cells from patients with type 1 diabetes

21 January 2018

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Repair of acute myocardial infarction by human stemness factors induced pluripotent stem cells.

21 January 2018

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Induced pluripotent stem cells from a spinal muscular atrophy patient

21 January 2018

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Induced pluripotent stem cells from highly endangered species

21 January 2018

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Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming

21 January 2018

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Hemangioblastic derivatives from human induced pluripotent stem cells exhibit limited expansion and early senescence

21 January 2018

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Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency

21 January 2018

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Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures

21 January 2018

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Molecular analyses of human induced pluripotent stem cells and embryonic stem cells

21 January 2018

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Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells

21 January 2018

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Lab-specific gene expression signatures in pluripotent stem cells

21 January 2018

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Core transcriptional regulatory circuitry in human embryonic stem cells

21 January 2018

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Regulatory networks define phenotypic classes of human stem cell lines

21 January 2018

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Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells

21 January 2018

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Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells.

21 January 2018

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The complex language of chromatin regulation during transcription

21 January 2018

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Linking DNA methylation and histone modification: patterns and paradigms

21 January 2018

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Developmental pattern of gene-specific DNA methylation in the mouse embryo and germ line

21 January 2018

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Genomic approaches to deconstruct pluripotency

21 January 2018

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Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming

21 January 2018

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Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

21 January 2018

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Epigenetic memory in induced pluripotent stem cells

21 January 2018

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Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells

21 January 2018

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Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines

21 January 2018

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

21 January 2018

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Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

21 January 2018

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Genomic maps and comparative analysis of histone modifications in human and mouse

21 January 2018

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Polycomb complexes repress developmental regulators in murine embryonic stem cells

21 January 2018

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

21 January 2018

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Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells

21 January 2018

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A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos.

21 January 2018

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Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos

21 January 2018

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Dissecting direct reprogramming through integrative genomic analysis

21 January 2018

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The EMT-activator ZEB1 promotes tumorigenicity by repressing stemness-inhibiting microRNAs

21 January 2018

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MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells

21 January 2018

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Functional genomics reveals a BMP-driven mesenchymal-to-epithelial transition in the initiation of somatic cell reprogramming

21 January 2018

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Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells

21 January 2018

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Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency

21 January 2018

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MicroRNA profiling of human-induced pluripotent stem cells

21 January 2018

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Genomic alterations in cultured human embryonic stem cells

21 January 2018

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Copy number variation and selection during reprogramming to pluripotency

21 January 2018

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Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture

21 January 2018

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Somatic coding mutations in human induced pluripotent stem cells

21 January 2018

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Global quantification of mammalian gene expression control

21 January 2018

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Quantitative, high-resolution proteomics for data-driven systems biology

21 January 2018

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Mapping protein post-translational modifications with mass spectrometry

21 January 2018

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The time is right: proteome biology of stem cells

21 January 2018

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Systems-level dynamic analyses of fate change in murine embryonic stem cells

21 January 2018

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An expanded Oct4 interaction network: implications for stem cell biology, development, and disease

21 January 2018

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An Oct4-centered protein interaction network in embryonic stem cells

21 January 2018

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Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes.

21 January 2018

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An enhanced mass spectrometry approach reveals human embryonic stem cell growth factors in culture

21 January 2018

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Investigating the role of FGF-2 in stem cell maintenance by global phosphoproteomics profiling.

21 January 2018

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Phosphoproteomic analysis of human embryonic stem cells

21 January 2018

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Phosphorylation dynamics during early differentiation of human embryonic stem cells.

21 January 2018

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System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

21 January 2018

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Defining pluripotent stem cells through quantitative proteomic analysis.

21 January 2018

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Proteomic and phosphoproteomic comparison of human ES and iPS cells

21 January 2018

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Quantitative proteomic analysis of mouse embryonic fibroblasts and induced pluripotent stem cells using 16O/18O labeling

21 January 2018

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Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

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Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.

21 January 2018

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Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

21 January 2018

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Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach

21 January 2018

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Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.

21 January 2018

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Prevention of amino acid conversion in SILAC experiments with embryonic stem cells.

21 January 2018

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Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins

21 January 2018

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Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap

21 January 2018

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MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

21 January 2018

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Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

21 January 2018

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Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy

21 January 2018

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The quantitative proteome of a human cell line.

21 January 2018

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Deep proteome and transcriptome mapping of a human cancer cell line

21 January 2018

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An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming

21 January 2018

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Targeted RNA sequencing reveals the deep complexity of the human transcriptome

21 January 2018

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The impact of microRNAs on protein output

21 January 2018

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Widespread changes in protein synthesis induced by microRNAs

21 January 2018

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Proteomic analysis of Sox2-associated proteins during early stages of mouse embryonic stem cell differentiation identifies Sox21 as a novel regulator of stem cell fate.

21 January 2018

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A protein interaction network for pluripotency of embryonic stem cells

21 January 2018

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Resources for proteomics in mouse embryonic stem cells.

21 January 2018

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The transcriptional and signalling networks of pluripotency

21 January 2018

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BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3

21 January 2018

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Activin/Nodal and FGF pathways cooperate to maintain pluripotency of human embryonic stem cells.

21 January 2018

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Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells

21 January 2018

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Regulation of human embryonic stem cell differentiation by BMP-2 and its antagonist noggin.

21 January 2018

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Controlling the stem cell compartment and regeneration in vivo: the role of pluripotency pathways

21 January 2018

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Promotion of reprogramming to ground state pluripotency by signal inhibition

21 January 2018

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Wnt signaling promotes reprogramming of somatic cells to pluripotency

21 January 2018

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Decoding signalling networks by mass spectrometry-based proteomics

21 January 2018

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A tissue-specific atlas of mouse protein phosphorylation and expression

21 January 2018

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Lysine acetylation targets protein complexes and co-regulates major cellular functions

21 January 2018

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Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling

21 January 2018

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Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints.

21 January 2018

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A drug-inducible transgenic system for direct reprogramming of multiple somatic cell types

21 January 2018

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Transgenic mice with defined combinations of drug-inducible reprogramming factors

21 January 2018

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Cellular heterogeneity: do differences make a difference?

21 January 2018

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Variability in gene expression underlies incomplete penetrance

21 January 2018

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Direct cell reprogramming is a stochastic process amenable to acceleration

21 January 2018

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Trends in ultrasensitive proteomics

21 January 2018

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Highly sensitive proteome analysis of FACS-sorted adult colon stem cells

21 January 2018

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Reading protein modifications with interaction domains

21 January 2018

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The significance, development and progress of high-throughput combinatorial histone code analysis

21 January 2018

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Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

21 January 2018

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Beta-N-acetylglucosamine (O-GlcNAc) is part of the histone code

21 January 2018

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The utility of ETD mass spectrometry in proteomic analysis

21 January 2018

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High throughput characterization of combinatorial histone codes

21 January 2018

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Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells

21 January 2018

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Two-dimensional liquid chromatography system for online top-down mass spectrometry

21 January 2018

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Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

21 January 2018

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A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein

21 January 2018

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A bioinformatic assay for pluripotency in human cells

21 January 2018

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Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

21 January 2018

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Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.

21 January 2018

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GATE: software for the analysis and visualization of high-dimensional time series expression data

21 January 2018

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Disease-specific induced pluripotent stem cells

21 January 2018

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Modeling inherited metabolic disorders of the liver using human induced pluripotent stem cells.

21 January 2018

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Anti-Aβ drug screening platform using human iPS cell-derived neurons for the treatment of Alzheimer's disease

21 January 2018

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Mass spectrometry-based proteomics in preclinical drug discovery

21 January 2018

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Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory?

21 January 2018

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Transcriptional signature and memory retention of human-induced pluripotent stem cells

21 January 2018

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Persistent donor cell gene expression among human induced pluripotent stem cells contributes to differences with human embryonic stem cells

21 January 2018

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Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells

21 January 2018

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MicroRNA profiling reveals two distinct p53-related human pluripotent stem cell states

21 January 2018

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Defining hypo-methylated regions of stem cell-specific promoters in human iPS cells derived from extra-embryonic amnions and lung fibroblasts

21 January 2018

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Identification and Classification of Chromosomal Aberrations in Human Induced Pluripotent Stem Cells

21 January 2018

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An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics

21 January 2018

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Elite and stochastic models for induced pluripotent stem cell generation

21 January 2018

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21 January 2018

Identifiers

DOI

10.1586/EPR.12.30

1 reference

27 August 2017

1 reference

PubMed ID

22967076