Pre-analytical and analytical variability in absolute quantitative MRM-based plasma proteomic studies (Q38164428)

30 August 2017

Pre-analytical and analytical variability in absolute quantitative MRM-based plasma proteomic studies (English)

1 reference

30 August 2017

Andrew J Percy

1

1 reference

PubMed ID

24256362

30 August 2017

Carol E Parker

series ordinal

2

1 reference

PubMed ID

24256362

30 August 2017

Christoph H Borchers

series ordinal

3

1 reference

30 August 2017

1 November 2013

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30 August 2017

1 reference

30 August 2017

5

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30 August 2017

22

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30 August 2017

2837-2856

1 reference

Enhanced sensitivity for selected reaction monitoring mass spectrometry-based targeted proteomics using a dual stage electrodynamic ion funnel interface.

30 August 2017

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Proteomics by mass spectrometry: approaches, advances, and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Mass spectrometry and protein analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Mass spectrometry for proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Improving mass spectrometer sensitivity using a high-pressure electrodynamic ion funnel interface

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Top-down approaches for measuring expression ratios of intact yeast proteins using Fourier transform mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Processing complex mixtures of intact proteins for direct analysis by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Direct analysis of protein complexes using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Mass spectrometry-based proteomics turns quantitative

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantitation in mass-spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Relative protein quantification by MS/MS using the tandem mass tag technology

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Perspectives of targeted mass spectrometry for protein biomarker verification

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Isotope dilution strategies for absolute quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

In-depth proteomics of ovarian cancer ascites: combining shotgun proteomics and selected reaction monitoring mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Priority actions for the non-communicable disease crisis

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Projections of global mortality and burden of disease from 2002 to 2030

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Inflammatory biomarkers in coronary artery disease

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The human plasma proteome: history, character, and diagnostic prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Multiplexed MRM-based quantitation of candidate cancer biomarker proteins in undepleted and non-enriched human plasma.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Multiplexed quantitation of endogenous proteins in dried blood spots by multiple reaction monitoring-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Analysis of serum total and free PSA using immunoaffinity depletion coupled to SRM: correlation with clinical immunoassay tests

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quality and reliability of routine coagulation testing: can we trust that sample?

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Biological and methodical challenges of blood-based proteomics in the field of neurological research

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: implications for clinical proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Minimizing preanalytical variation of plasma samples by proper blood collection and handling

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Analytical validation of protein-based multiplex assays: a workshop report by the NCI-FDA interagency oncology task force on molecular diagnostics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: an NCI-CPTC initiative perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

THE HUPO Human Plasma Proteome Project.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The Human Proteome Organization Plasma Proteome Project pilot phase: reference specimens, technology platform comparisons, and standardized data submissions and analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Thrombin induces broad spectrum proteolysis in human serum samples

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Inhibition of intrinsic proteolytic activities moderates preanalytical variability and instability of human plasma

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The effect of pre-analytical variability on the measurement of MRM-MS-based mid- to high-abundance plasma protein biomarkers and a panel of cytokines

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Global stability of plasma proteomes for mass spectrometry-based analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Remarkable temporal stability of high-abundance human plasma proteins assessed by targeted mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The stability of the circulating human proteome to variations in sample collection and handling procedures measured with an aptamer-based proteomics array

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Diurnal protein expression in blood revealed by high throughput mass spectrometry proteomics and implications for translational medicine and body time of day.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Proteomic approaches in circadian biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Impact of the storage temperature on human plasma proteomic analysis: implications for the use of human plasma collections in research.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Complement and coagulation: strangers or partners in crime?

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Protein instability following transport or storage on dry ice.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Standard operating procedures for serum and plasma collection: early detection research network consensus statement standard operating procedure integration working group

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

SISCAPA peptide enrichment on magnetic beads using an in-line bead trap device

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Automated screening of monoclonal antibodies for SISCAPA assays using a magnetic bead processor and liquid chromatography-selected reaction monitoring-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

An immunoaffinity tandem mass spectrometry (iMALDI) assay for detection of Francisella tularensis

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Towards the development of an immuno MALDI (iMALDI) mass spectrometry assay for the diagnosis of hypertension

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Duplexed iMALDI for the detection of angiotensin I and angiotensin II.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Online monitoring of immunoaffinity-based depletion of high-abundance blood proteins by UV spectrophotometry using enhanced green fluorescence protein and FITC-labeled human serum albumin

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Fast and efficient proteolysis by microwave-assisted protein digestion using trypsin-immobilized magnetic silica microspheres

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Reproducible microwave-assisted acid hydrolysis of proteins using a household microwave oven and its combination with LC-ESI MS/MS for mapping protein sequences and modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Ultra fast trypsin digestion of proteins by high intensity focused ultrasound

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Application of pressurized solvents for ultrafast trypsin hydrolysis in proteomics: proteomics on the fly.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

On-line digestion system for protein characterization and proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Trends in sample preparation for classical and second generation proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Evaluation of the application of sodium deoxycholate to proteomic analysis of rat hippocampal plasma membrane.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Sodium-deoxycholate-assisted tryptic digestion and identification of proteolytically resistant proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Does trypsin cut before proline?

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The use of multiplexed MRM for the discovery of biomarkers to differentiate iron-deficiency anemia from anemia of inflammation.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

High-flow multiplexed MRM-based analysis of proteins in human plasma without depletion or enrichment.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Accurate quantification of cardiovascular biomarkers in serum using Protein Standard Absolute Quantification (PSAQ™) and selected reaction monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Simultaneous quantification of apolipoprotein A-I and apolipoprotein B by liquid-chromatography-multiple- reaction-monitoring mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Stable isotopes in pharmacology studies: present and future

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

PSAQ™ standards for accurate MS-based quantification of proteins: from the concept to biomedical applications

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Absolute quantitation of proteins in human blood by multiplexed multiple reaction monitoring mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Increased selectivity, analytical precision, and throughput in targeted proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

A computational tool to detect and avoid redundancy in selected reaction monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Quantitative Clinical Chemistry Proteomics (qCCP) using mass spectrometry: general characteristics and application

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Selectivity of LC-MS/MS analysis: implication for proteomics experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The journey to regulation of protein-based multiplex quantitative assays

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The HUPO proteomics standards initiative--overcoming the fragmentation of proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

The human proteome project: Current state and future direction.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Proteinchip(R) surface enhanced laser desorption/ionization (SELDI) mass spectrometry: a novel protein biochip technology for detection of prostate cancer biomarkers in complex protein mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Use of proteomic patterns in serum to identify ovarian cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Standardized protocols for quality control of MRM-based plasma proteomic workflows.

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Preanalytical Variables for Plasma and Serum Proteome Analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

MRM assay for quantitation of complement components in human blood plasma — a feasibility study on multiple sclerosis

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Platform for Establishing Interlaboratory Reproducibility of Selected Reaction Monitoring-Based Mass Spectrometry Peptide Assays

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

Isotope-labeled Protein Standards

21 January 2018

1 reference

https://api.crossref.org/works/10.4155%2FBIO.13.245

21 January 2018

Identifiers

DOI

10.4155/BIO.13.245

1 reference

30 August 2017

1 reference

PubMed ID

24256362