Docking of protein models (Q38270218)

1 September 2017

Docking of protein models (English)

1 reference

1 September 2017

Andrei Tovchigrechko

1

1 reference

1 September 2017

Christopher A Wells

series ordinal

2

1 reference

1 September 2017

Ilya A Vakser

series ordinal

3

1 reference

1 September 2017

1 August 2002

1 reference

1 September 2017

1 reference

1 September 2017

11

1 reference

1 September 2017

8

1 reference

1 September 2017

1888-1896

1 reference

How common is the funnel-like energy landscape in protein-protein interactions?

1 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Protein structure modeling for structural genomics.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

An overview of structural genomics.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Speeding molecular recognition by using the folding funnel: the fly-casting mechanism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Protein function in the post-genomic era.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

6 September 2017

Exploring genome space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Structural genomics and its importance for gene function analysis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

CASP3 comparative modeling evaluation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

A systematic study of low-resolution recognition in protein--protein complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Folding funnels, binding funnels, and protein function

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

JOY: protein sequence-structure representation and analysis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Reaching the global minimum in docking simulations: a Monte Carlo energy minimization approach using Bezier splines

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Evaluation of GRAMM low-resolution docking methodology on the hemagglutinin-antibody complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Empirical potentials and functions for protein folding and binding.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Comparative protein modelling by satisfaction of spatial restraints

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Structure classification-based assessment of CASP3 predictions for the fold recognition targets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Identification of the binding site on cytochrome P450 2B4 for cytochrome b5 and cytochrome P450 reductase.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

A potential smoothing algorithm accurately predicts transmembrane helix packing.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Predictive docking of protein-protein and protein-DNA complexes.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Theory of biomolecular recognition

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Long-distance potentials: an approach to the multiple-minima problem in ligand-receptor interaction.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Low-resolution docking: prediction of complexes for underdetermined structures.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Hydrophobic docking: a proposed enhancement to molecular recognition techniques.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Protein docking for low-resolution structures.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373684

Analysis and Application of Potential Energy Smoothing and Search Methods for Global Optimization

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1110%2FPS.4730102

Guilt-by-association goes global

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1110%2FPS.4730102

Construction of a 3D model of cytochrome P450 2B4

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12142443

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Main-chain complementarity in protein-protein recognition

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12142443

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1110/PS.4730102

1 reference

1 September 2017

1 reference

1 September 2017

PubMed publication ID

12142443

1 reference