Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops (Q38285365)

1 September 2017

9 references

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Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops (English)

1 reference

biomedical investigative technique

1 September 2017

biological adaptation

2 references

13 September 2019

23 November 2020

1 reference

16 September 2019

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19 September 2019

1 reference

22 October 2019

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30 October 2020

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25 November 2020

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5 December 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Oliver Smith

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Robin G Allaby

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Rafal Gutaker

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Neil Pearson

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Roselyn Ware

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Sarah A Palmer

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

James L Kitchen

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

language of work or name

English

0 references

publication date

1 January 2015

1 reference

Philosophical Transactions of the Royal Society B

1 September 2017

19 January 2015

9 references

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30 October 2020

23 November 2020

25 November 2020

5 December 2020

10 references

20 June 2019

13 September 2019

16 September 2019

19 September 2019

22 October 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

30 October 2020

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5 December 2020

370

1 reference

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11 June 2020

issue

1660

1 reference

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11 June 2020

page(s)

20130377

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

11 June 2020

copyright license

9 references

20 June 2019

13 September 2019

16 September 2019

19 September 2019

22 October 2019

30 October 2020

23 November 2020

25 November 2020

Genomic methylation patterns in archaeological barley show de-methylation as a time-dependent diagenetic process

5 December 2020

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Regional population collapse followed initial agriculture booms in mid-Holocene Europe

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Long-term RNA persistence in postmortem contexts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Deep sequencing of RNA from ancient maize kernels

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Widespread dynamic DNA methylation in response to biotic stress

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Genetic analysis of wheat domestication and evolution under domestication.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar, Populus balsamifera L.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

The blossoming of plant archaeogenetics.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Archaeological data reveal slow rates of evolution during plant domestication

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Integrating the processes in the evolutionary system of domestication

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

The origin and evolution of fragrance in rice (Oryza sativa L.).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Archaeogenetic evidence of ancient nubian barley evolution from six to two-row indicates local adaptation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Transposable elements: powerful facilitators of evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Hordeivirus Replication, Movement, and Pathogenesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

The complex origins of domesticated crops in the Fertile Crescent.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

The genetic expectations of a protracted model for the origins of domesticated crops

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Global dissemination of a single mutation conferring white pericarp in rice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Contrasting patterns in crop domestication and domestication rates: recent archaeobotanical insights from the Old World

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Anthropology. Autonomous cultivation before domestication

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

How fast was wild wheat domesticated?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Ancient plant DNA: review and prospects.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

AFLP data and the origins of domesticated crops

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Evolution of maize inferred from sequence diversity of an Adh2 gene segment from archaeological specimens

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Limits to Catalysis by Ribonuclease A.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Characterisation by molecular hybridization of RNA fragments isolated from ancient (1400 B.C.) seeds

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Archaeogenomic evidence of punctuated genome evolution in Gossypium

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Adaptive evolution of the Populus tremula photoperiod pathway.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

The history and disposition of transposable elements in polyploid Gossypium.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Population genomics of the Arabidopsis thaliana flowering time gene network.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus).

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Deletion in a gene associated with grain size increased yields during rice domestication

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

The effects of artificial selection on the maize genome

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Early allelic selection in maize as revealed by ancient DNA.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Rate variation among nuclear genes and the age of polyploidy in Gossypium

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Evolution of the high molecular weight glutenin loci of the A, B, D, and G genomes of wheat

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Das Domestikationssyndrom

31 August 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

The spread of Neolithic plant economies from the Near East to northwest Europe: a phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

6. Domestication rates in wild-type wheats and barley under primitive cultivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

The cost of natural selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

Next generation sequencing of DNA in 3300-year-old charred cereal grains

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

Systems Modeling at Multiple Levels of Regulation: Linking Systems and Genetic Networks to Spatially Explicit Plant Populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

Remarkable preservation of biomolecules in ancient radish seeds

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4275885

Cultivation and domestication had multiple origins: arguments against the core area hypothesis for the origins of agriculture in the Near East

1 October 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

Domestication as innovation: the entanglement of techniques, technology and chance in the domestication of cereal crops

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

Ecological constraints on the first prehistoric farmers in Europe

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

The evolution of Neolithic farming from SW Asian origins to NW European limits

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2013.0377

The thermal degradation of nucleic acids

21 January 2018

1 reference

12 December 2020

Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice

1 reference

12 December 2020

Population-based resequencing reveals that the flowering time adaptation of cultivated barley originated east of the Fertile Crescent

1 reference

12 December 2020

OsLG1 regulates a closed panicle trait in domesticated rice

1 reference

12 December 2020

COMPARATIVE EVOLUTION OF CEREALS

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSTB.2013.0377

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

25487329

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25487329%20AND%20SRC:MED&resulttype=core&format=json