Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation. (Q38300814)

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scientific article published on 15 June 2007

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English	Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation.	scientific article published on 15 June 2007

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scholarly article

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31 December 2019

Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation (English)

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31 December 2019

Bradyrhizobium japonicum

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1

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31 December 2019

Gabriella Pessi

2

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31 December 2019

author name string

Markus Friberg

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31 December 2019

Christoph Weber

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31 December 2019

Nicola Rusca

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31 December 2019

Andrea Lindemann

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31 December 2019

Hans-Martin Fischer

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31 December 2019

Hauke Hennecke

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31 December 2019

publication date

15 June 2007

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31 December 2019

Molecular Genetics and Genomics

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31 December 2019

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255-271

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31 December 2019

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31 December 2019

https://scigraph.springernature.com/pub.10.1007/s00438-007-0246-9

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One member of a gro-ESL-like chaperonin multigene family in Bradyrhizobium japonicum is co-regulated with symbiotic nitrogen fixation genes

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Rhizobium japonicum nitrogenase Fe protein gene (nifH)

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Two different mechanisms are involved in the heat-shock regulation of chaperonin gene expression in Bradyrhizobium japonicum.

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The pleiotropic nature of symbiotic regulatory mutants: Bradyrhizobium japonicum nifA gene is involved in control of nif gene expression and formation of determinate symbiosis.

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Purification and characterization of a ferredoxin from Rhizobium japonicum bacteroids

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RNA polymerase from Rhizobium japonicum.

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Site-directed mutagenesis of the Klebsiella pneumoniae nifL and nifH promoters and in vivo analysis of promoter activity.

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Design and validation of a partial-genome microarray for transcriptional profiling of the Bradyrhizobium japonicum symbiotic gene region.

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Organization and characterization of genes essential for symbiotic nitrogen fixation from Bradyrhizobium japonicum I110.

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Fine-tuning of nif and fix gene expression by upstream activator sequences in Bradyrhizobium japonicum

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Domain architectures of sigma54-dependent transcriptional activators

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Metabolic changes of rhizobia in legume nodules

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IHF- and RpoN-dependent regulation of hydrogenase expression in Bradyrhizobium japonicum.

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Growth of the cyanobacterium Anabaena on molecular nitrogen: NifJ is required when iron is limited

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Complete Genomic Sequence of Nitrogen-fixing Symbiotic Bacterium Bradyrhizobium japonicum USDA110

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Differential transcription of the two glutamine synthetase genes of Bradyrhizobium japonicum

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RegB/RegA, a highly conserved redox-responding global two-component regulatory system

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

1 reference

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nifH promoter activity is regulated by DNA supercoiling in Sinorhizobium meliloti.

1 reference

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Expression of the fixR-nifA operon in Bradyrhizobium japonicum depends on a new response regulator, RegR.

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Anaerobic-nitrate, symbiotic and aerobic growth of Rhizobium japonicum: effects on cytochrome P 450 , other haemoproteins, nitrate and nitrite reductases

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Identification of nodS and nodU, two inducible genes inserted between the Bradyrhizobium japonicum nodYABC and nodIJ genes.

1 reference

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WebLogo: A Sequence Logo Generator

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DNA supercoiling and aerobic regulation of transcription from the Klebsiella pneumoniae nifLA promoter

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Organic compatible solutes of halotolerant and halophilic microorganisms

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The Bradyrhizobium japonicum fixBCX operon: identification of fixX and of a 5' mRNA region affecting the level of the fixBCX transcript

1 reference

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Electron transport to nitrogenase in Rhodospirillum rubrum: identification of a new fdxN gene encoding the primary electron donor to nitrogenase

1 reference

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12 December 2020

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Bradyrhizobium japonicum glnB, a putative nitrogen-regulatory gene, is regulated by NtrC at tandem promoters

1 reference

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12 December 2020

based on heuristic

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The Rhizobium meliloti fdxN gene encoding a ferredoxin-like protein is necessary for nitrogen fixation and is cotranscribed with nifA and nifB

1 reference

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12 December 2020

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Direct response of Bradyrhizobium japonicum nifA-mediated nif gene regulation to cellular oxygen status.

1 reference

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Genetic regulation of biological nitrogen fixation

1 reference

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Three new NifA-regulated genes in the Bradyrhizobium japonicum symbiotic gene region discovered by competitive DNA-RNA hybridization

1 reference

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Genetic regulation of nitrogen fixation in rhizobia.

1 reference

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12 December 2020

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Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN).

1 reference

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12 December 2020

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Use of a promoter-probe vector system in the cloning of a new NifA-dependent promoter (ndp) from Bradyrhizobium japonicum

1 reference

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12 December 2020

based on heuristic

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Potential symbiosis-specific genes uncovered by sequencing a 410-kilobase DNA region of the Bradyrhizobium japonicum chromosome

1 reference

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12 December 2020

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Activation of the Bradyrhizobium japonicum nifH and nifDK operons is dependent on promoter-upstream DNA sequences

1 reference

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12 December 2020

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1 reference

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1 reference

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12 December 2020

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Classifying symbiotic proteins from Bradyrhizobium japonicum into functional groups by proteome analysis of altered gene expression levels

1 reference

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12 December 2020

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1 reference

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12 December 2020

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Expression of Rhizobium japonicum nifH and nifDK operons can be activated by the Klebsiella pneumonia nifA protein but not by the product of ntrC

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Electron transport to nitrogenase. Purification and characterization of pyruvate:flavodoxin oxidoreductase. The nifJ gene product

1 reference

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12 December 2020

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A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction

1 reference

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12 December 2020

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Transcription of the glnB and glnA genes in the photosynthetic bacterium Rhodospirillum rubrum.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo genomic footprinting analysis reveals that the complex Bradyrhizobium japonicum fixRnifA promoter region is differently occupied by two distinct RNA polymerase holoenzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptional activation of the Klebsiella pneumoniae nitrogenase promoter may involve DNA loop formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a new Bradyrhizobium japonicum gene (frxA) encoding a ferredoxinlike protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

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A Bradyrhizobium japonicum gene essential for nodulation competitiveness is differentially regulated from two promoters.

1 reference

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12 December 2020

based on heuristic

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Regulatory proteins and cis-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes.

1 reference

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12 December 2020

based on heuristic

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The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of the nifA gene product in the regulation of nif expression in Klebsiella pneumoniae

1 reference

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12 December 2020

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New developments in the InterPro database

1 reference

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12 December 2020

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Genome wide identification of regulatory motifs in Bacillus subtilis

1 reference

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12 December 2020

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Reconstruction of microbial transcriptional regulatory networks

1 reference

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12 December 2020

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inferred from PubMed ID database lookup

The nifH promoter region of Rhizobium leguminosarum: nucleotide sequence and promoter elements controlling activation by NifA protein

1 reference

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12 December 2020

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Bradyrhizobium japonicum FixK2, a crucial distributor in the FixLJ-dependent regulatory cascade for control of genes inducible by low oxygen levels

1 reference

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12 December 2020

based on heuristic

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Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping and nucleotide sequence of the nifS promoter of Bradyrhizobium japonicum

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Applications of DNA tiling arrays for whole-genome analysis

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Additivity in protein-DNA interactions: how good an approximation is it?

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutations in genes downstream of the rpoN gene (encoding sigma 54) of Klebsiella pneumoniae affect expression from sigma 54-dependent promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biological Nitrogen Fixation: Primary Structure of theRhizobium trifoliiIron Protein Gene

1 reference

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12 December 2020

based on heuristic

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Sinorhizobium meliloti differentiation during symbiosis with alfalfa: a transcriptomic dissection

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Disparate oxygen responsiveness of two regulatory cascades that control expression of symbiotic genes in Bradyrhizobium japonicum

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of the fixA gene and fixBC operon in Bradyrhizobium japonicum

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and characterization of a novel Bradyrhizobium japonicum gene involved in host-specific nitrogen fixation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New NodW- or NifA-Regulated Bradyrhizobium japonicum Genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17569992

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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