Specific and nonspecific hybridization of oligonucleotide probes on microarrays (Q38327913)

2 September 2017

Specific and nonspecific hybridization of oligonucleotide probes on microarrays (English)

1 reference

2 September 2017

Stephan Preibisch

2

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author name string

Hans Binder

series ordinal

1

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PMCID

1366534

2 September 2017

language of work or name

English

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publication date

15 April 2005

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2 September 2017

16

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inferred from page(s)

published in

Biophysical Journal

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2 September 2017

89

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2 September 2017

1

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2 September 2017

337-352

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Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays

2 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Prediction of hybridization and melting for double-stranded nucleic acids

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Sensitivity, specificity, and the hybridization isotherms of DNA chips.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Probe selection for high-density oligonucleotide arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Thermodynamic calculations and statistical correlations for oligo-probes design.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Modeling of DNA microarray data by using physical properties of hybridization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

A model of molecular interactions on short oligonucleotide microarrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Summaries of Affymetrix GeneChip probe level data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Coulomb blockage of hybridization in two-dimensional DNA arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

The effect of surface probe density on DNA hybridization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

High density synthetic oligonucleotide arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

The biophysics of DNA hybridization with immobilized oligonucleotide probes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

An assessment of Motorola CodeLink microarray performance for gene expression profiling applications

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

The importance of thermodynamic equilibrium for high throughput gene expression arrays.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Stochastic models inspired by hybridization theory for short oligonucleotide arrays.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

DNA hybridization to mismatched templates: a chip study.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366534

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

31 August 2018

1 reference

12 December 2020

Effect of oligonucleotide truncation on single-nucleotide distinction by solid-phase hybridization

1 reference

12 December 2020

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

12 December 2020

Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes

1 reference

12 December 2020

Thermodynamics of single mismatches in RNA duplexes

1 reference

12 December 2020

Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation

1 reference

12 December 2020

Effect of Oligonucleotide Truncation on Single-Nucleotide Distinction by Solid-Phase Hybridization

1 reference

1 April 2022

https://opencitations.net/index/coci/api/v1/citations/10.1021/AC010555S

Identifiers

DOI

10.1529/BIOPHYSJ.104.055343

1 reference

2 September 2017

1 reference

1 reference

2 September 2017

1 reference

PMCID

1366534