Sequence-dependent dynamics of TATA-Box binding sites (Q38335938)

2 September 2017

Sequence-dependent dynamics of TATA-Box binding sites (English)

1 reference

2 September 2017

Flatters D

1

1 reference

2 September 2017

Lavery R

series ordinal

2

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2 September 2017

language of work or name

English

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publication date

1 July 1998

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2 September 2017

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2 September 2017

75

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2 September 2017

1

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2 September 2017

372-381

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A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

2 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Local DNA stretching mimics the distortion caused by the TATA box-binding protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

How proteins recognize the TATA box

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Co-crystal structure of TBP recognizing the minor groove of a TATA element

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Crystal structure of a yeast TBP/TATA-box complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Helix geometry, hydration, and G.A mismatch in a B-DNA decamer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Structural basis for DNA bending

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Defining the structure of irregular nucleic acids: conventions and principles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Anisotropic flexibility of DNA and the nucleosomal structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Modelling extreme stretching of DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Bending and curvature calculations in B-DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

One- and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Statistical analysis of DNA duplex structural features

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Measuring the geometry of DNA grooves.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

DNA: an extensible molecule.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1299706

Molecular dynamics with coupling to an external bath

31 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

The unusual conformation adopted by the adenine tracts in kinetoplast DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

Conformational properties of the TATA-box binding sequence of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

B-DNA twisting correlates with base-pair morphology.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

Comparison of simple potential functions for simulating liquid water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

DNA bending is an important component of site-specific recognition by the TATA binding protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

An all atom force field for simulations of proteins and nucleic acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2898%2977521-6

Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9649394

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(98)77521-6

1 reference

2 September 2017

1 reference

2 September 2017

PubMed publication ID

9649394

1 reference