Pronounced instability of tandem IU base pairs in RNA. (Q38343303)

2 September 2017

Pronounced instability of tandem IU base pairs in RNA. (English)

1 reference

2 September 2017

3

Eric Westhof

1 reference

2 September 2017

1

Martin J Serra

1 reference

2 September 2017

Patricia E Smolter

2

1 reference

PMCID

390343

2 September 2017

language of work or name

English

0 references

publication date

22 March 2004

1 reference

2 September 2017

Nucleic Acids Research

1 reference

2 September 2017

32

1 reference

2 September 2017

5

1 reference

2 September 2017

1824-1828

1 reference

Effects of magnesium ions on the stabilization of RNA oligomers of defined structures

2 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Specific cleavage of hyper-edited dsRNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Conserved geometrical base-pairing patterns in RNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

On the wobble GoU and related pairs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2'-O-Me(CGCGCG)2 under low salt conditions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Free energy of imperfect nucleic acid helices. II. Small hairpin loops

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

A periodic table of symmetric tandem mismatches in RNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

The role of RNA editing by ADARs in RNAi

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390343

Nearest-neighbor parameters for G.U mismatches: [formula; see text] is destabilizing in the contexts [formula; see text] and [formula; see text] but stabilizing in [formula; see text]

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15037659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15037659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hydrophobic Groups Stabilize the Hydration Shell of 2'-O-Methylated RNA Duplexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15037659

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKH501

1 reference

2 September 2017

1 reference

2 September 2017

1 reference

PMCID

390343