Characterisation of new substrate specificities of Escherichia coli and Saccharomyces cerevisiae AP endonucleases (Q38348799)

2 September 2017

Characterisation of new substrate specificities of Escherichia coli and Saccharomyces cerevisiae AP endonucleases (English)

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2 September 2017

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Saccharomyces cerevisiae

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inferred from title

author name string

Alexander A Ishchenko

1

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2 September 2017

Guenhaël Sanz

2

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2 September 2017

Cyril V Privezentzev

3

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2 September 2017

Andrei V Maksimenko

4

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2 September 2017

Murat Saparbaev

5

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2 September 2017

language of work or name

English

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publication date

1 November 2003

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2 September 2017

Nucleic Acids Research

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2 September 2017

31

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2 September 2017

21

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2 September 2017

6344-6353

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describes a project that uses

2 September 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC275454/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Characterization of two independent amino acid substitutions that disrupt the DNA repair functions of the yeast Apn1.

6 September 2017

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Enzymology of the repair of free radicals-induced DNA damage

6 September 2017

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Keynote: past, present, and future aspects of base excision repair

6 September 2017

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The HAP1 protein stimulates the turnover of human mismatch-specific thymine-DNA-glycosylase to process 3,N(4)-ethenocytosine residues

6 September 2017

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Abortive base-excision repair of radiation-induced clustered DNA lesions in Escherichia coli

6 September 2017

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Recent progress in the biology, chemistry and structural biology of DNA glycosylases

6 September 2017

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6 September 2017

DNA replication fidelity

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Initiation of base excision repair: glycosylase mechanisms and structures

6 September 2017

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Distinct repair activities of human 7,8-dihydro-8-oxoguanine DNA glycosylase and formamidopyrimidine DNA glycosylase for formamidopyrimidine and 7,8-dihydro-8-oxoguanine

6 September 2017

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Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis

6 September 2017

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The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative DNA damage in yeast

6 September 2017

1 reference

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Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue

6 September 2017

1 reference

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3,N4-ethenocytosine, a highly mutagenic adduct, is a primary substrate for Escherichia coli double-stranded uracil-DNA glycosylase and human mismatch-specific thymine-DNA glycosylase

6 September 2017

1 reference

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Substrate specificity of the Ogg1 protein of Saccharomyces cerevisiae: excision of guanine lesions produced in DNA by ionizing radiation- or hydrogen peroxide/metal ion-generated free radicals

6 September 2017

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Evidence for a common active site for cleavage of an AP site and the benzene-derived exocyclic adduct, 3,N4-benzetheno-dC, in the major human AP endonuclease

6 September 2017

1 reference

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Second pathway for completion of human DNA base excision-repair: reconstitution with purified proteins and requirement for DNase IV (FEN1).

6 September 2017

1 reference

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Kinetics of excision of purine lesions from DNA by Escherichia coli Fpg protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

An unusual mechanism for the major human apurinic/apyrimidinic (AP) endonuclease involving 5' cleavage of DNA containing a benzene-derived exocyclic adduct in the absence of an AP site

6 September 2017

1 reference

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Instability and decay of the primary structure of DNA

6 September 2017

1 reference

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Substrate specificity of the Escherichia coli endonuclease III: excision of thymine- and cytosine-derived lesions in DNA produced by radiation-generated free radicals

6 September 2017

1 reference

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Excision of hypoxanthine from DNA containing dIMP residues by the Escherichia coli, yeast, rat, and human alkylpurine DNA glycosylases

6 September 2017

1 reference

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Interactions of Escherichia coli endonuclease IV and exonuclease III with abasic sites in DNA.

6 September 2017

1 reference

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Specificity of the mutator caused by deletion of the yeast structural gene (APN1) for the major apurinic endonuclease

6 September 2017

1 reference

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Alpha-deoxyadenosine, a major anoxic radiolysis product of adenine in DNA, is a substrate for Escherichia coli endonuclease IV.

6 September 2017

1 reference

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Two rotameric forms of open ring 7-methylguanine are present in alkylated polynucleotides

6 September 2017

1 reference

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Formation of cytosine glycol and 5,6-dihydroxycytosine in deoxyribonucleic acid on treatment with osmium tetroxide

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Synthesis of DNA fragments containing 5,6-dihydrothymine, a major product of thymine gamma radiolysis

6 September 2017

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Yeast DNA diesterase for 3'-fragments of deoxyribose: purification and physical properties of a repair enzyme for oxidative DNA damage

6 September 2017

1 reference

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Endonuclease III (nth) mutants of Escherichia coli

6 September 2017

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Genetic toxicology of oxygen

6 September 2017

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Escherichia coli proteins inducible by oxidative stress mediated by the superoxide radical

6 September 2017

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Endonuclease IV of Escherichia coli is induced by paraquat

6 September 2017

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Endonuclease IV (nfo) mutant of Escherichia coli

6 September 2017

1 reference

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Processing of DNA base damage by DNA polymerases. Dihydrothymine and beta-ureidoisobutyric acid as models for instructive and noninstructive lesions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

soxR, a locus governing a superoxide response regulon in Escherichia coli K-12

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Yeast structural gene (APN1) for the major apurinic endonuclease: homology to Escherichia coli endonuclease IV

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Redox redux: the control of oxidative stress responses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Endogenous oxidative damage of deoxycytidine in DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

A new endonuclease from Escherichia coli acting at apurinic sites in DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

The Saccharomyces cerevisiae ETH1 gene, an inducible homolog of exonuclease III that provides resistance to DNA-damaging agents and limits spontaneous mutagenesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Negative autoregulation by the Escherichia coli SoxS protein: a dampening mechanism for the soxRS redox stress response

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

A role for the human DNA repair enzyme HAP1 in cellular protection against DNA damaging agents and hypoxic stress

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Cellular role of yeast Apn1 apurinic endonuclease/3'-diesterase: repair of oxidative and alkylation DNA damage and control of spontaneous mutation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

The base excision repair pathway

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

DNA glycosylases in the base excision repair of DNA

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Hydrogen peroxide induces DNA single strand breaks in respiratory epithelial cells

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Radiation-induced DNA damage and its repair.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Mechanism of DNA strand nicking at apurinic/apyrimidinic sites by Escherichia coli [formamidopyrimidine]DNA glycosylase

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Base modifications in plasmid DNA caused by potassium permanganate

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Yields of radiation-induced base products in DNA: effects of DNA conformation and gassing conditions.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase): excision of purine lesions in DNA produced by ionizing radiation or photosensitization.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Sequence specificity of DNA repair by Escherichia coli Fpg protein

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Two enzymes are required from strand incision in repair of alkylated DNA

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

New class of enzymes acting on damaged DNA

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

AP endonuclease 1 coordinates flap endonuclease 1 and DNA ligase I activity in long patch base excision repair

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Alternative nucleotide incision repair pathway for oxidative DNA damage

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Recognition of formamidopyrimidine by Escherichia coli and mammalian thymine glycol glycosylases. Distinctive paired base effects and biological and mechanistic implications.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

A murine AP-endonuclease gene-targeted deficiency with post-implantation embryonic progression and ionizing radiation sensitivity.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Inactivation of OGG1 increases the incidence of G . C-->T . A transversions in Saccharomyces cerevisiae: evidence for endogenous oxidative damage to DNA in eukaryotic cells.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Thymine ring saturation and fragmentation products: lesion bypass, misinsertion and implications for mutagenesis.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Hydrogen peroxide-induced base damage in deoxyribonucleic acid

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=275454

Database of mouse strains carrying targeted mutations in genes affecting biological responses to DNA damage. Version 5

31 August 2018

1 reference

12 December 2020

The selective photolysis of dihydrothymidine

1 reference

12 December 2020

Sites of gamma radiation-induced DNA strand breaks after alkali treatment

1 reference

12 December 2020

Production of dihydrothymidine stereoisomers in DNA by gamma-irradiation

1 reference

12 December 2020

Yeast DNA 3'-repair diesterase is the major cellular apurinic/apyrimidinic endonuclease: substrate specificity and kinetics

1 reference

12 December 2020

Complementation of DNA repair-deficient Escherichia coli by the yeast Apn1 apurinic/apyrimidinic endonuclease gene

1 reference

12 December 2020

8-Hydroxyguanine is not produced by permanganate oxidation of DNA

1 reference

12 December 2020

Characterization of the effects of a thymine glycol residue on the structure, dynamics, and stability of duplex DNA by NMR

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG812

1 reference

2 September 2017

1 reference

2 September 2017

1 reference